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## B

B_TYPE_PROCYANIDIN_DIMER_DEGRADATION_PATTERN1 - biotransformer.transformation.MRPatterns.ReactionName
B_TYPE_PROCYANIDIN_DIMER_DEGRADATION_PATTERN2 - biotransformer.transformation.MRPatterns.ReactionName
B_TYPE_PROCYANIDIN_DIMER_DEGRADATION_PATTERN3 - biotransformer.transformation.MRPatterns.ReactionName
B_TYPE_PROCYANIDIN_DIMER_DEGRADATION_PATTERN4 - biotransformer.transformation.MRPatterns.ReactionName
BACTERIAL_BILE_SALT_12_HYDROXYSTEROID_DEHYDROGENASE - biotransformer.biomolecule.Enzyme.EnzymeName
BACTERIAL_BILE_SALT_3_HYDROXYSTEROID_DEHYDROGENASE - biotransformer.biomolecule.Enzyme.EnzymeName
BACTERIAL_BILE_SALT_7_HYDROXYSTEROID_DEHYDROGENASE - biotransformer.biomolecule.Enzyme.EnzymeName
BACTERIAL_LACTONASE - biotransformer.biomolecule.Enzyme.EnzymeName
BACTERIAL_NITROREDUCTASE - biotransformer.biomolecule.Enzyme.EnzymeName
BENZALDEHYDE_DEHYDROGENATION - biotransformer.transformation.MRPatterns.ReactionName
BENZOIC_ACID_DECARBOXYLATION - biotransformer.transformation.MRPatterns.ReactionName
BETA_D_GALACTOSIDE_6_ACETYLATION - biotransformer.transformation.MRPatterns.ReactionName
BETA_D_GALACTOSIDE_GALACTO_HYDROLYSIS_PATTERN1 - biotransformer.transformation.MRPatterns.ReactionName
BETA_D_GALACTOSIDE_GALACTO_HYDROLYSIS_PATTERN2 - biotransformer.transformation.MRPatterns.ReactionName
BETA_D_GALACTOSIDE_GALACTO_HYDROLYSIS_PATTERN3 - biotransformer.transformation.MRPatterns.ReactionName
BETA_D_GALACTOSYL_BETA_D_GLUCOSYL_CERAMIDE_ACETYLGALACTOSAMINE_TRANSFER - biotransformer.transformation.MRPatterns.ReactionName
BETA_D_GLUCORONOSIDE_GLUCURONOSOHYDROLYSIS - biotransformer.transformation.MRPatterns.ReactionName
BETA_GLUCORONOSIDE_GLUCURONOSOHYDROLYSIS - biotransformer.transformation.MRPatterns.ReactionName
BETA_HYDROXYLATED_FATTY_ACID - biotransformer.utils.ChemicalClassFinder.ChemicalClassName
BETA_OXIDATION_OF_CARBXOYLIC_ACID - biotransformer.transformation.MRPatterns.ReactionName
BILE_ACID - biotransformer.utils.ChemicalClassFinder.ChemicalClassName
BILE_ACID_METABOLISM - biotransformer.transformation.MetabolicPathway.MPathwayName
BIOSYNTHESIS_OF_AMINO_ACIDS - biotransformer.transformation.MetabolicPathway.MPathwayName
BIOSYNTHESIS_OF_UNSATURATED_FATTY_ACIDS - biotransformer.transformation.MetabolicPathway.MPathwayName
bioSysName - Variable in class biotransformer.transformation.MReactionsFilter
BioSystem - Class in biotransformer.biosystems
BioSystem(BioSystem.BioSystemName, ArrayList<Enzyme>) - Constructor for class biotransformer.biosystems.BioSystem
BioSystem(BioSystem.BioSystemName, ObjectMapper) - Constructor for class biotransformer.biosystems.BioSystem
BioSystem.BioSystemName - Enum in biotransformer.biosystems
Biotransformation - Class in biotransformer.transformation
Biotransformation(IAtomContainerSet, MRPatterns.ReactionName, Enzyme.EnzymeName, IAtomContainerSet) - Constructor for class biotransformer.transformation.Biotransformation
Biotransformation(IAtomContainerSet, MRPatterns.ReactionName, ArrayList<Enzyme.EnzymeName>, IAtomContainerSet, BioSystem.BioSystemName) - Constructor for class biotransformer.transformation.Biotransformation
Biotransformation(IAtomContainerSet, MRPatterns.ReactionName, ArrayList<Enzyme.EnzymeName>, IAtomContainerSet, Double, BioSystem.BioSystemName) - Constructor for class biotransformer.transformation.Biotransformation
Biotransformer - Class in biotransformer.btransformers
Biotransformer(BioSystem.BioSystemName) - Constructor for class biotransformer.btransformers.Biotransformer
biotransformer.biomolecule - package biotransformer.biomolecule
  This class implements the class of metabolic enzymes.
biotransformer.biosystems - package biotransformer.biosystems
biotransformer.btransformers - package biotransformer.btransformers
biotransformer.esaprediction - package biotransformer.esaprediction
biotransformer.fingerprint - package biotransformer.fingerprint
biotransformer.transformation - package biotransformer.transformation
biotransformer.utils - package biotransformer.utils
biotransformer.version - package biotransformer.version
BioTransformerDBBuilder - Class in biotransformer.utils
BioTransformerDBBuilder() - Constructor for class biotransformer.utils.BioTransformerDBBuilder
BiotransformerExecutable - Class in executable
BiotransformerExecutable() - Constructor for class executable.BiotransformerExecutable
BISALLYLIC_HYDROXYLATION - biotransformer.transformation.MRPatterns.ReactionName
bSystem - Variable in class biotransformer.btransformers.Biotransformer
btPriorityHash - Variable in class biotransformer.transformation.MReactionsFilter
buildBiotransformationList(String, String) - Method in class biotransformer.utils.BioTransformerDBBuilder
buildCYP450ReactionLibrary(String) - Method in class biotransformer.utils.BioTransformerDBBuilder
buildCYPspecificitySDFFileFromDB(String, String) - Method in class biotransformer.utils.BioTransformerDBBuilder
buildSdfFromTSV(String) - Static method in class biotransformer.utils.FileUtilities

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