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## I

IMIDAZOLIDINE_OXIDATION - biotransformer.transformation.MRPatterns.ReactionName
IMINIUM_STANDARDIZATION - biotransformer.transformation.MRPatterns.ReactionName
inchiGenFactory - Variable in class biotransformer.btransformers.Biotransformer
inchiGenFactory - Static variable in class biotransformer.utils.ChemStructureExplorer
inchiGenFactory - Variable in class biotransformer.utils.MetaboliteFinder
inchikeyEqualityHolds(IAtomContainer, IAtomContainer) - Static method in class biotransformer.utils.ChemStructureExplorer
  Given two molecules, find out whether they are equal.
INOSITOL_3_PHOSPHATE_TRANSFER_TO_CDP_DIACYLGLYCEROL - biotransformer.transformation.MRPatterns.ReactionName
INOSITOL_PHOSPHATE_METABOLISM - biotransformer.transformation.MetabolicPathway.MPathwayName
isAcylCoAConjugate(IAtomContainer) - Static method in class biotransformer.utils.ChemicalClassFinder
isAlphaHydroxyFattyAcid(IAtomContainer) - Static method in class biotransformer.utils.ChemicalClassFinder
isAromatic(IAtomContainer) - Static method in class biotransformer.utils.ChemStructureExplorer
isBetaHydroxyFattyAcid(IAtomContainer) - Static method in class biotransformer.utils.ChemicalClassFinder
isBioTransformerValid(IAtomContainer) - Static method in class biotransformer.utils.ChemStructureExplorer
isBioTransformerValidStrict(IAtomContainer) - Static method in class biotransformer.utils.ChemStructureExplorer
isBtValid(IAtomContainer) - Static method in class biotransformer.utils.ChemStructureExplorer
isC23BileAcid(IAtomContainer) - Static method in class biotransformer.utils.ChemicalClassFinder
isC24BileAcid(IAtomContainer) - Static method in class biotransformer.utils.ChemicalClassFinder
isCompoundInorganic(IAtomContainer) - Static method in class biotransformer.utils.ChemStructureExplorer
isConjugationCandidate(IAtomContainer) - Method in class biotransformer.btransformers.ECBasedBTransformer
isConjugationCandidate(IAtomContainer) - Method in class biotransformer.btransformers.HGutBTransformer
isDeconjugationCandidate(IAtomContainer) - Method in class biotransformer.btransformers.ECBasedBTransformer
isDeconjugationCandidate(IAtomContainer) - Method in class biotransformer.btransformers.HGutBTransformer
isEtherLipid(IAtomContainer) - Static method in class biotransformer.utils.ChemicalClassFinder
isFattyAcid(IAtomContainer) - Static method in class biotransformer.utils.ChemicalClassFinder
isGlutathioneConjugate(IAtomContainer) - Static method in class biotransformer.utils.ChemicalClassFinder
isGlycerol_3_PhosphateInositol(IAtomContainer) - Static method in class biotransformer.utils.ChemicalClassFinder
isGlyceroLipid(IAtomContainer) - Static method in class biotransformer.utils.ChemicalClassFinder
isGlycerophosphoLipid(IAtomContainer) - Static method in class biotransformer.utils.ChemicalClassFinder
isGlycinatedCompound(IAtomContainer) - Static method in class biotransformer.utils.ChemicalClassFinder
isGlycosylatedCompound(IAtomContainer) - Static method in class biotransformer.utils.ChemicalClassFinder
isInvalidPhase2Metabolite(IAtomContainer) - Static method in class biotransformer.utils.ChemStructureExplorer
isInvalidPhaseIISubstrateByExlcusion(IAtomContainer) - Static method in class biotransformer.utils.ChemStructureExplorer
isMetabolizablePolyphenolOrDerivative(IAtomContainer) - Static method in class biotransformer.utils.ChemStructureExplorer
isMixture(IAtomContainer) - Static method in class biotransformer.utils.ChemStructureExplorer
ISOCYANATE_STANDARDIZATION - biotransformer.transformation.MRPatterns.ReactionName
ISOFLAVAN_4_OL_DEHYDROXYLATION - biotransformer.transformation.MRPatterns.ReactionName
ISOFLAVANONE_C_RING_FISSION_PATTERN1 - biotransformer.transformation.MRPatterns.ReactionName
ISOFLAVANONE_C_RING_FISSION_PATTERN2 - biotransformer.transformation.MRPatterns.ReactionName
ISOFLAVANONE_DEHYDRATION - biotransformer.transformation.MRPatterns.ReactionName
ISOFLAVONE_4P_O_METHYLATION - biotransformer.transformation.MRPatterns.ReactionName
ISOFLAVONE_4P_OH_GLUCURONIDATION - biotransformer.transformation.MRPatterns.ReactionName
ISOFLAVONE_6_C_DEGLYCOSYLATION - biotransformer.transformation.MRPatterns.ReactionName
ISOFLAVONE_7_OH_GLUCURONIDATION - biotransformer.transformation.MRPatterns.ReactionName
ISOFLAVONE_8_C_DEGLYCOSYLATION - biotransformer.transformation.MRPatterns.ReactionName
ISOFLAVONE_REDUCTION_TO_ISOFLAVANONE - biotransformer.transformation.MRPatterns.ReactionName
isOligoOrPolysaccharide(IAtomContainer) - Static method in class biotransformer.utils.ChemicalClassFinder
isOmegaHydroxyFattyAcid(IAtomContainer) - Static method in class biotransformer.utils.ChemicalClassFinder
ISOMERIZATION_OF_ALKYLARENE_OXIDE_TO_PHENOL - biotransformer.transformation.MRPatterns.ReactionName
ISOXAZOLE_RING_OPENING - biotransformer.transformation.MRPatterns.ReactionName
  Miscellaneous
isPhaseIPolyphenolCandidateOrDerivative(IAtomContainer) - Static method in class biotransformer.utils.ChemStructureExplorer
isPolyphenolOrDerivative(IAtomContainer) - Static method in class biotransformer.utils.ChemStructureExplorer
isPotentialHumanPhase2SubstrateByReactionPatternMatching(IAtomContainer) - Method in class biotransformer.btransformers.Phase2BTransformer
isPotentialNonHumanPhase2SubstrateByReactionPatternMatching(IAtomContainer) - Method in class biotransformer.btransformers.Phase2BTransformer
isPotentialPhase2SubstrateByReactionPatternMatching(IAtomContainer) - Method in class biotransformer.btransformers.Phase2BTransformer
isPotentialPhaseIISubstrateByReactionPatternMatching(IAtomContainer) - Static method in class biotransformer.utils.ChemStructureExplorer
isPotentialSubstrateByReactionPatternMatching(IAtomContainer, Enzyme.EnzymeName) - Method in class biotransformer.esaprediction.ESSpecificityPredictor
isPpsCofactor(String) - Static method in class biotransformer.utils.ChemStructureExplorer
isPpsCofactor(IAtomContainer) - Static method in class biotransformer.utils.ChemStructureExplorer
isPpsDeadEndCompound(String) - Static method in class biotransformer.utils.ChemStructureExplorer
isPpsDeadEndCompound(IAtomContainer) - Static method in class biotransformer.utils.ChemStructureExplorer
isPpsValid(IAtomContainer) - Static method in class biotransformer.utils.ChemStructureExplorer
isSaturatedFattyAcid(IAtomContainer) - Static method in class biotransformer.utils.ChemicalClassFinder
isSphingoLipid(IAtomContainer) - Static method in class biotransformer.utils.ChemicalClassFinder
isStandardAminoAcid(IAtomContainer) - Static method in class biotransformer.utils.ChemStructureExplorer
isSulfatedCompound(IAtomContainer) - Static method in class biotransformer.utils.ChemicalClassFinder
isSulfateEster(IAtomContainer) - Static method in class biotransformer.utils.ChemicalClassFinder
isTetrapyrrole(IAtomContainer) - Static method in class biotransformer.utils.ChemicalClassFinder
isUnneccessaryMetabolite(IAtomContainer) - Static method in class biotransformer.utils.ChemStructureExplorer
isUnsaturatedFattyAcid(IAtomContainer) - Static method in class biotransformer.utils.ChemicalClassFinder
isUnsubstitutedSatudatedFattyAcid(IAtomContainer) - Static method in class biotransformer.utils.ChemicalClassFinder
isValid_EC_2_8_2_2_substrate(IAtomContainer, boolean) - Method in class biotransformer.esaprediction.ESSpecificityPredictor
isValidCyp450Substrate(IAtomContainer, Enzyme.EnzymeName) - Method in class biotransformer.esaprediction.ESSpecificityPredictor
isValidCyp450Substrate(IAtomContainer, Enzyme.EnzymeName, ArrayList<ChemicalClassFinder.ChemicalClassName>) - Method in class biotransformer.esaprediction.ESSpecificityPredictor
isValidSubstrate(IAtomContainer, Enzyme.EnzymeName) - Method in class biotransformer.btransformers.Biotransformer
isValidSubstrate(IAtomContainer, Enzyme.EnzymeName) - Method in class biotransformer.esaprediction.ESSpecificityPredictor
isValidSubstrate(IAtomContainer, Enzyme.EnzymeName, ArrayList<ChemicalClassFinder.ChemicalClassName>) - Method in class biotransformer.esaprediction.ESSpecificityPredictor

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