A B C D E F G H I K L M N O P Q R S T U V _
All Classes All Packages

## A

ABKAR1 - biotransformer.biomolecule.Enzyme.EnzymeName
ABKAR2 - biotransformer.biomolecule.Enzyme.EnzymeName
ACETYLNEURAMINYL_HYDROLYSIS_PATTERN1 - biotransformer.transformation.MRPatterns.ReactionName
ACETYLNEURAMINYL_HYDROLYSIS_PATTERN2 - biotransformer.transformation.MRPatterns.ReactionName
ACETYLNEURAMINYL_HYDROLYSIS_PATTERN3 - biotransformer.transformation.MRPatterns.ReactionName
ACETYLTRANSFERASE - biotransformer.biomolecule.Enzyme.EnzymeName
ACYL_COA_11Z_DESATURATION - biotransformer.transformation.MRPatterns.ReactionName
ACYL_COA_C_ACYL_TRANSFER - biotransformer.transformation.MRPatterns.ReactionName
ACYL_CoA_CONJUGATE - biotransformer.utils.ChemicalClassFinder.ChemicalClassName
ACYL_COA_GLYCEROL_3_PHOSPHATE_1_O_ACYL_TRANSFER - biotransformer.transformation.MRPatterns.ReactionName
ACYL_COA_OXIDATION - biotransformer.transformation.MRPatterns.ReactionName
ACYL_COA_TRANS_2_OXIDOREDUCTION - biotransformer.transformation.MRPatterns.ReactionName
ACYL_HYDROLYSIS_OF_4_NITROPHENYL_ESTER - biotransformer.transformation.MRPatterns.ReactionName
ACYL_O_DEGLYCOSYLATION - biotransformer.transformation.MRPatterns.ReactionName
ACYLCHOLINE_ACYLHYDROLYSIS - biotransformer.transformation.MRPatterns.ReactionName
ACYLGLYCEROL_3_PHOSPHATE_OXIDATION - biotransformer.transformation.MRPatterns.ReactionName
ACYLGLYCERONE_3_PHOSPHATE_REDUCTION - biotransformer.transformation.MRPatterns.ReactionName
ACYLPHOSPHATE_PHOSPHOHYDROLYSIS - biotransformer.transformation.MRPatterns.ReactionName
addInChIandKey(IAtomContainer) - Static method in class biotransformer.utils.ChemStructureExplorer
addPhysicoChemicalProperties(IAtomContainer) - Static method in class biotransformer.utils.ChemStructureExplorer
addReaction(MetabolicReaction) - Method in class biotransformer.biomolecule.Enzyme
ALCOHOL_O_CINNAMOYL_TRANSFER_REVERSE - biotransformer.transformation.MRPatterns.ReactionName
ALDEHYDE_DEHYDROGENATION - biotransformer.transformation.MRPatterns.ReactionName
ALDEHYDE_OXIDATION - biotransformer.transformation.MRPatterns.ReactionName
ALDEHYDE_REDUCTION - biotransformer.transformation.MRPatterns.ReactionName
ALIPHATIC_ACYL_O_GLUCURONIDATION - biotransformer.transformation.MRPatterns.ReactionName
ALIPHATIC_HYDROLYTIC_DEHALOGENATION - biotransformer.transformation.MRPatterns.ReactionName
ALIPHATIC_HYDROXYLATION - biotransformer.transformation.MRPatterns.ReactionName
ALIPHATIC_HYDROXYLATION_AT_PENULTIMATE_CARBON_ADJACENT_TO_AROMATIC_CARBON - biotransformer.transformation.MRPatterns.ReactionName
ALIPHATIC_HYDROXYLATION_OF_ACYCLIC_12_DISUBSTITUTED_ALKENE_PATTERN1 - biotransformer.transformation.MRPatterns.ReactionName
ALIPHATIC_HYDROXYLATION_OF_ALPLHA_CARBON_IN_ARYL_OR_VINYL_ETHER - biotransformer.transformation.MRPatterns.ReactionName
ALIPHATIC_HYDROXYLATION_OF_CARBON_ADJACENT_TO_HALOGEN_GROUP - biotransformer.transformation.MRPatterns.ReactionName
ALIPHATIC_HYDROXYLATION_OF_CARBON_ADJACENT_TO_OXYGEN - biotransformer.transformation.MRPatterns.ReactionName
ALIPHATIC_HYDROXYLATION_OF_CARBON_ADJACENT_TO_SULFUR - biotransformer.transformation.MRPatterns.ReactionName
ALIPHATIC_HYDROXYLATION_OF_CARBON_ALPHA_TO_PRIMARY_ALKYL_N - biotransformer.transformation.MRPatterns.ReactionName
ALIPHATIC_HYDROXYLATION_OF_CARBON_ALPHA_TO_SECONDARY_OR_TERTIARY_ALKYL_N - biotransformer.transformation.MRPatterns.ReactionName
ALIPHATIC_HYDROXYLATION_OF_ENDOCYCLIC_CARBON - biotransformer.transformation.MRPatterns.ReactionName
ALIPHATIC_HYDROXYLATION_OF_METHYL_CARBON_ADJACENT_TO_ALKYNE_GROUP - biotransformer.transformation.MRPatterns.ReactionName
ALIPHATIC_HYDROXYLATION_OF_METHYL_CARBON_ADJACENT_TO_AROMATIC_RING - biotransformer.transformation.MRPatterns.ReactionName
ALIPHATIC_HYDROXYLATION_OF_METHYL_CARBON_ADJACENT_TO_VINYL_GROUP - biotransformer.transformation.MRPatterns.ReactionName
ALIPHATIC_NITRILE_DEGRADATION_TO_CARBOXYLIC_ACID - biotransformer.transformation.MRPatterns.ReactionName
ALIPHATIC_REDUCTIVE_DEHALOGENATION - biotransformer.transformation.MRPatterns.ReactionName
ALKENE_EPOXIDATION_PATTERN1 - biotransformer.transformation.MRPatterns.ReactionName
ALKENE_EPOXIDATION_PATTERN2 - biotransformer.transformation.MRPatterns.ReactionName
ALKENE_HYDROXYLATION - biotransformer.transformation.MRPatterns.ReactionName
ALKENYLGLYCERO_3_PHOSPHOCHOLINE_HYDROLYSIS_TO_GLYCERO_3_PHOSPHOCHOLINE - biotransformer.transformation.MRPatterns.ReactionName
ALKENYLGLYCERO_3_PHOSPHOETHANOLAMINE_HYDROLYSIS_TO_GLYCERO_3_PHOSPHOETHANOLAMINE - biotransformer.transformation.MRPatterns.ReactionName
ALKYL_HYDROXYLATION - biotransformer.transformation.MRPatterns.ReactionName
ALKYL_OH_DEGLYCOSYLATION - biotransformer.transformation.MRPatterns.ReactionName
ALKYL_OH_GLUCURONIDATION - biotransformer.transformation.MRPatterns.ReactionName
ALKYLGLYCEROL_3_PHOSPHATE_OXIDATION - biotransformer.transformation.MRPatterns.ReactionName
ALKYLGLYCERONE_PHOSPHATE_SYNTHESIS - biotransformer.transformation.MRPatterns.ReactionName
ALL_TRANS_RETINYL_ESTER_ACYLHYDROLYSIS - biotransformer.transformation.MRPatterns.ReactionName
ALLYLIC_HYDROXLATION - biotransformer.transformation.MRPatterns.ReactionName
ALLYLIC_HYDROXYLATION - biotransformer.transformation.MRPatterns.ReactionName
ALLYLIC_HYDROXYLATION_PATTERN1 - biotransformer.transformation.MRPatterns.ReactionName
ALLYLIC_HYDROXYLATION_PATTERN2 - biotransformer.transformation.MRPatterns.ReactionName
ALLYLIC_HYDROXYLATION_PATTERN3 - biotransformer.transformation.MRPatterns.ReactionName
ALPHA_AMINO_ACID - biotransformer.biomolecule.StructuralChemicalCategory.SCCategoryName
ALPHA_BETA_MANNOSIDE_MANNOHYDROLYSIS - biotransformer.transformation.MRPatterns.ReactionName
ALPHA_HYDROXYLATED_FATTY_ACID - biotransformer.utils.ChemicalClassFinder.ChemicalClassName
ALPHA_HYDROXYLATION_OF_ARYLDIMETHYLAMINE - biotransformer.transformation.MRPatterns.ReactionName
ALPHA_HYDROXYLATION_OF_ARYLDIMETHYLAMINE_PATTERN1 - biotransformer.transformation.MRPatterns.ReactionName
ALPHA_HYDROXYLATION_OF_ARYLDIMETHYLAMINE_PATTERN2 - biotransformer.transformation.MRPatterns.ReactionName
ALPHA_HYDROXYLATION_OF_ARYLDIMETHYLFORMAMIDINE - biotransformer.transformation.MRPatterns.ReactionName
ALPHA_HYDROXYLATION_OF_ARYLDIMETHYLUREA - biotransformer.transformation.MRPatterns.ReactionName
ALPHA_HYDROXYLATION_OF_CARBONYL_GROUP - biotransformer.transformation.MRPatterns.ReactionName
ALPHA_KETO_ACID_DECARBOXYLATION - biotransformer.transformation.MRPatterns.ReactionName
  After decarboxylation, the resulting aldehyde transiently is quickly oxidized to a carboxylic acid
ALPHA_L_RHAMNOSIDE_RHAMNOHYDROLYSIS - biotransformer.transformation.MRPatterns.ReactionName
ALPHA_N_ACETYL_GLUCOSAMINIDE_N_ACETYL_GLUCOSAMINOHYDROLYSIS - biotransformer.transformation.MRPatterns.ReactionName
ALPHA_OXIDATION_OF_CARBXOYLIC_ACID - biotransformer.transformation.MRPatterns.ReactionName
AMIDE_N_GLUCURONIDATION - biotransformer.transformation.MRPatterns.ReactionName
AMINE_N_OXIDATION - biotransformer.transformation.MRPatterns.ReactionName
ANDROGEN_AROMATIZATION - biotransformer.transformation.MRPatterns.ReactionName
ANILINE_P_HYDROXYLATION - biotransformer.transformation.MRPatterns.ReactionName
annotateAtomContainerWithProps(IAtomContainer, LinkedHashMap<Object, Object>) - Static method in class biotransformer.utils.Utilities
annotateWithProperties(IAtomContainer) - Static method in class biotransformer.utils.ChemStructureExplorer
ANTHOCYANIDIN_3O_DEGLUCOSYLATION - biotransformer.transformation.MRPatterns.ReactionName
ANTHOCYANIDIN_3O_GLUCOSIDE_6PP_DEACYLATION - biotransformer.transformation.MRPatterns.ReactionName
ANTHOCYANIDIN_3O_GLUCOSYLATION1 - biotransformer.transformation.MRPatterns.ReactionName
ANTHOCYANIDIN_3O_GLUCOSYLATION2 - biotransformer.transformation.MRPatterns.ReactionName
ANTHOCYANIDIN_C_RING_FISSION_PATTERN1 - biotransformer.transformation.MRPatterns.ReactionName
ANTHOCYANIDIN_C_RING_FISSION_PATTERN2 - biotransformer.transformation.MRPatterns.ReactionName
ANTHOCYANIDIN_C_RING_FISSION_PATTERN3 - biotransformer.transformation.MRPatterns.ReactionName
ANTHOCYANIDIN_C_RING_FISSION_PATTERN4 - biotransformer.transformation.MRPatterns.ReactionName
ANTHOCYANIDIN_C_RING_FISSION_PATTERN5 - biotransformer.transformation.MRPatterns.ReactionName
ANTHOCYANIDIN_REDUCTION - biotransformer.transformation.MRPatterns.ReactionName
ANTHOCYANIDIN_STANDARDIZATION_PATTERN1 - biotransformer.transformation.MRPatterns.ReactionName
ANTHOCYANIN_5_6PPP_HYDROXYCINNAMOYL_TRANSFER_REVERSE - biotransformer.transformation.MRPatterns.ReactionName
ANTHOCYANIN_6PP_MALONYL_TRANSFER_REVERSE - biotransformer.transformation.MRPatterns.ReactionName
applyEcBasedConjuationsChain(IAtomContainer, boolean, boolean, int) - Method in class biotransformer.btransformers.ECBasedBTransformer
applyEcBasedConjuationsChain(IAtomContainer, boolean, boolean, int, double) - Method in class biotransformer.btransformers.ECBasedBTransformer
applyEcBasedConjugations(IAtomContainer, boolean, boolean, double) - Method in class biotransformer.btransformers.ECBasedBTransformer
applyEcBasedDeconjuations(IAtomContainer, boolean, boolean, int) - Method in class biotransformer.btransformers.ECBasedBTransformer
applyEcBasedDeconjuationsChain(IAtomContainer, boolean, boolean, int) - Method in class biotransformer.btransformers.ECBasedBTransformer
applyEcBasedDeconjuationsChain(IAtomContainer, boolean, boolean, int, double) - Method in class biotransformer.btransformers.ECBasedBTransformer
applyEcBasedDeconjugations(IAtomContainer, boolean, boolean, int, double) - Method in class biotransformer.btransformers.ECBasedBTransformer
applyEcBasedTransformations(IAtomContainer, boolean, boolean) - Method in class biotransformer.btransformers.ECBasedBTransformer
applyEcBasedTransformations(IAtomContainer, boolean, boolean, double) - Method in class biotransformer.btransformers.ECBasedBTransformer
applyEcBasedTransformationsChain(IAtomContainer, boolean, boolean, int) - Method in class biotransformer.btransformers.ECBasedBTransformer
applyEcBasedTransformationsChain(IAtomContainer, boolean, boolean, int, double) - Method in class biotransformer.btransformers.ECBasedBTransformer
applyEnvMicrobialTransformations(IAtomContainer, boolean, boolean) - Method in class biotransformer.btransformers.EnvMicroBTransformer
applyEnvMicrobialTransformations(IAtomContainer, boolean, boolean, double) - Method in class biotransformer.btransformers.EnvMicroBTransformer
applyEnvMicrobialTransformations(IAtomContainerSet, boolean, boolean, double) - Method in class biotransformer.btransformers.EnvMicroBTransformer
applyEnvMicrobialTransformationsChain(IAtomContainer, boolean, boolean, int) - Method in class biotransformer.btransformers.EnvMicroBTransformer
applyEnvMicrobialTransformationsChain(IAtomContainer, boolean, boolean, int, double) - Method in class biotransformer.btransformers.EnvMicroBTransformer
applyGutMicrobialConjugations(IAtomContainer, boolean, boolean) - Method in class biotransformer.btransformers.HGutBTransformer
applyGutMicrobialConjugations(IAtomContainer, boolean, boolean, double) - Method in class biotransformer.btransformers.HGutBTransformer
applyGutMicrobialConjugationsChain(IAtomContainer, boolean, boolean, int) - Method in class biotransformer.btransformers.HGutBTransformer
applyGutMicrobialConjugationsChain(IAtomContainer, boolean, boolean, int, Double) - Method in class biotransformer.btransformers.HGutBTransformer
applyGutMicrobialDeconjugations(IAtomContainer, boolean, boolean) - Method in class biotransformer.btransformers.HGutBTransformer
applyGutMicrobialDeconjugations(IAtomContainer, boolean, boolean, double) - Method in class biotransformer.btransformers.HGutBTransformer
applyGutMicrobialDeconjugationsChain(IAtomContainer, boolean, boolean, int) - Method in class biotransformer.btransformers.HGutBTransformer
applyGutMicrobialDeconjugationsChain(IAtomContainer, boolean, boolean, int, Double) - Method in class biotransformer.btransformers.HGutBTransformer
applyGutMicrobialMetabolismHydrolysisAndRedoxChain(IAtomContainer, boolean, boolean, int, Double) - Method in class biotransformer.btransformers.HGutBTransformer
applyGutMicrobialMetabolismHydrolysisAndRedoxChain(IAtomContainerSet, boolean, boolean, int, Double) - Method in class biotransformer.btransformers.HGutBTransformer
applyGutMicrobialMetabolismHydrolysisAndRedoxChain(IAtomContainerSet, boolean, boolean, int, Double) - Method in class biotransformer.utils.HumanSuperBioTransformer
applyGutMicrobialMetabolismHydrolysisAndRedoxStep(IAtomContainer, boolean, boolean, Double) - Method in class biotransformer.btransformers.HGutBTransformer
applyGutMicrobialMetabolismHydrolysisAndRedoxStep(IAtomContainerSet, boolean, boolean, Double) - Method in class biotransformer.btransformers.HGutBTransformer
applyGutMicrobialRedoxChain(IAtomContainer, boolean, boolean, int, Double) - Method in class biotransformer.btransformers.HGutBTransformer
applyGutMicrobialRedoxReactions(IAtomContainer, boolean, boolean) - Method in class biotransformer.btransformers.HGutBTransformer
applyGutMicrobialRedoxReactions(IAtomContainer, boolean, boolean, double) - Method in class biotransformer.btransformers.HGutBTransformer
applyGutMicrobialRedoxReactionsChain(IAtomContainer, boolean, boolean, int) - Method in class biotransformer.btransformers.HGutBTransformer
applyPathwaySpecificBiotransformationChain(IAtomContainer, MetabolicPathway.MPathwayName, boolean, boolean, int) - Method in class biotransformer.btransformers.Biotransformer
applyPathwaySpecificBiotransformations(IAtomContainer, MetabolicPathway.MPathwayName, boolean, boolean, double) - Method in class biotransformer.utils.HumanSuperBioTransformer
applyPathwaySpecificBiotransformations(IAtomContainer, MetabolicPathway.MPathwayName, boolean, boolean, Double) - Method in class biotransformer.btransformers.Biotransformer
  Predicts the metabolism of a compound for a specific pathway, and returns metabolites with a minimal given score threshold.
applyPathwaySpecificBiotransformations(IAtomContainerSet, MetabolicPathway.MPathwayName, boolean, boolean, Double) - Method in class biotransformer.btransformers.Biotransformer
  Predicts the metabolism of a compound for a specific pathway, and returns metabolites with a minimal given score threshold.
applyPathwaySpecificBiotransformationsChain(IAtomContainer, MetabolicPathway.MPathwayName, boolean, boolean, int, Double) - Method in class biotransformer.btransformers.Biotransformer
applyPathwaySpecificBiotransformationsChain(IAtomContainerSet, MetabolicPathway.MPathwayName, boolean, boolean, int, Double) - Method in class biotransformer.btransformers.Biotransformer
applyPhase2Transformations(IAtomContainer, boolean, boolean, boolean) - Method in class biotransformer.btransformers.Phase2BTransformer
applyPhase2Transformations(IAtomContainer, boolean, boolean, boolean, double) - Method in class biotransformer.btransformers.Phase2BTransformer
applyPhase2Transformations(IAtomContainerSet, boolean, boolean, boolean, double) - Method in class biotransformer.btransformers.Phase2BTransformer
applyPhase2TransformationsChainAndReturnBiotransformations(IAtomContainer, boolean, boolean, boolean, int) - Method in class biotransformer.btransformers.Phase2BTransformer
applyPhase2TransformationsChainAndReturnBiotransformations(IAtomContainer, boolean, boolean, boolean, int, Double) - Method in class biotransformer.btransformers.Phase2BTransformer
applyPhase2TransformationsChainAndReturnBiotransformations(IAtomContainerSet, boolean, boolean, boolean, int, Double) - Method in class biotransformer.btransformers.Phase2BTransformer
applyPhaseIITransformationsChainAndReturnBiotransformations(IAtomContainerSet, int, double) - Method in class biotransformer.utils.HumanSuperBioTransformer
applyReactionAndReturnBiotransformations(IAtomContainer, MetabolicReaction, boolean) - Method in class biotransformer.btransformers.Biotransformer
applyReactionAndReturnBiotransformations(IAtomContainer, MetabolicReaction, boolean, Double) - Method in class biotransformer.btransformers.Biotransformer
applyReactionAndReturnBiotransformations(IAtomContainer, MetabolicReaction, boolean, Double) - Method in class biotransformer.btransformers.Phase2BTransformer
applyReactionAtOnceAndReturnBiotransformations(IAtomContainer, MetabolicReaction, boolean, Double) - Method in class biotransformer.btransformers.Biotransformer
applyReactionAtOnceAndReturnBiotransformations(IAtomContainer, ArrayList<MetabolicReaction>, boolean, boolean, int, Double) - Method in class biotransformer.btransformers.Biotransformer
applyReactionAtOnceAndReturnBiotransformations(IAtomContainer, ArrayList<MetabolicReaction>, boolean, boolean, Double) - Method in class biotransformer.btransformers.Biotransformer
applyReactionAtOnceAndReturnBiotransformations(IAtomContainerSet, ArrayList<MetabolicReaction>, boolean, boolean, Double) - Method in class biotransformer.btransformers.Biotransformer
applyReactionChain(IAtomContainer, SMIRKSManager, LinkedHashMap<String, MetabolicReaction>, boolean, boolean, int) - Method in class biotransformer.btransformers.Biotransformer
applyReactionChain(IAtomContainer, SMIRKSManager, LinkedHashMap<String, MetabolicReaction>, boolean, boolean, int, Double) - Method in class biotransformer.btransformers.Biotransformer
applyReactionChainFromSDF(String, boolean, boolean, boolean, int, Double) - Method in class biotransformer.btransformers.Phase2BTransformer
applyReactionChainFromSdfToSingleSdf(String, boolean, boolean, boolean, int, Double, String, boolean) - Method in class biotransformer.btransformers.Phase2BTransformer
applyReactions(IAtomContainer, SMIRKSManager, LinkedHashMap<String, MetabolicReaction>, boolean, boolean) - Method in class biotransformer.btransformers.Biotransformer
applyReactions(IAtomContainer, LinkedHashMap<String, MetabolicReaction>, boolean, boolean, Double) - Method in class biotransformer.btransformers.Biotransformer
applyReactionsAndReturnBiotransformations(IAtomContainer, ArrayList<MetabolicReaction>, boolean, boolean) - Method in class biotransformer.btransformers.Biotransformer
applyReactionsAndReturnBiotransformations(IAtomContainer, ArrayList<MetabolicReaction>, boolean, boolean, Double) - Method in class biotransformer.btransformers.Biotransformer
applyReactionsAndReturnBiotransformations(IAtomContainer, ArrayList<MetabolicReaction>, boolean, boolean, Double) - Method in class biotransformer.btransformers.EnvMicroBTransformer
applyReactionsAndReturnBiotransformations(IAtomContainer, ArrayList<MetabolicReaction>, boolean, boolean, Double) - Method in class biotransformer.btransformers.Phase2BTransformer
applyReactionsChainAndReturnBiotransformations(IAtomContainer, ArrayList<MetabolicReaction>, boolean, boolean, int) - Method in class biotransformer.btransformers.Biotransformer
applyReactionsChainAndReturnBiotransformations(IAtomContainer, ArrayList<MetabolicReaction>, boolean, boolean, int, Double) - Method in class biotransformer.btransformers.Biotransformer
applyReactionsChainAndReturnBiotransformations(IAtomContainerSet, ArrayList<MetabolicReaction>, boolean, boolean, int) - Method in class biotransformer.btransformers.Biotransformer
applyReactionsChainAndReturnBiotransformations(IAtomContainerSet, ArrayList<MetabolicReaction>, boolean, boolean, int, Double) - Method in class biotransformer.btransformers.Biotransformer
applyReactionsFromContainersAndReturnBiotransformations(IAtomContainerSet, ArrayList<MetabolicReaction>, boolean, boolean, Double) - Method in class biotransformer.btransformers.Biotransformer
ARALKYLAMINE_N_ACETYLATION - biotransformer.transformation.MRPatterns.ReactionName
ARALKYLAMINE_N_ACETYLATION_PATTERN2 - biotransformer.transformation.MRPatterns.ReactionName
ARENE_EPOXIDATION_PATTERN1 - biotransformer.transformation.MRPatterns.ReactionName
ARENE_EPOXIDATION_PATTERN2 - biotransformer.transformation.MRPatterns.ReactionName
AROMATIC_ACYL_O_GLUCURONIDATION - biotransformer.transformation.MRPatterns.ReactionName
AROMATIC_ALDEHYDE_REDUCTION - biotransformer.transformation.MRPatterns.ReactionName
AROMATIC_AMINO_ACID_TRANSAMINATION - biotransformer.transformation.MRPatterns.ReactionName
AROMATIC_HYDROXYLATION_OF_FUSED_BENZENE_RING_PATTERN1 - biotransformer.transformation.MRPatterns.ReactionName
AROMATIC_HYDROXYLATION_OF_FUSED_BENZENE_RING_PATTERN2 - biotransformer.transformation.MRPatterns.ReactionName
AROMATIC_HYDROXYLATION_OF_FUSED_BENZENE_RING_PATTERN3 - biotransformer.transformation.MRPatterns.ReactionName
AROMATIC_HYDROXYLATION_OF_FUSED_BENZENE_RING_PATTERN4 - biotransformer.transformation.MRPatterns.ReactionName
AROMATIC_HYDROXYLATION_PATTERN2 - biotransformer.transformation.MRPatterns.ReactionName
  CYP450 reactions
AROMATIC_HYDROXYLATION_PATTERN3 - biotransformer.transformation.MRPatterns.ReactionName
AROMATIC_L_AMINO_ACID_DECARBOXYLATION - biotransformer.transformation.MRPatterns.ReactionName
AROMATIC_N_OXIDATION - biotransformer.transformation.MRPatterns.ReactionName
AROMATIC_O_METHYLATION - biotransformer.transformation.MRPatterns.ReactionName
AROMATIC_OH_GLUCURONIDATION - biotransformer.transformation.MRPatterns.ReactionName
ARSENITE_O_METHYLATION - biotransformer.transformation.MRPatterns.ReactionName
ARYL_ALCOHOL_DEHYDROGENATION - biotransformer.transformation.MRPatterns.ReactionName
ARYL_ALCOHOL_OXIDATION - biotransformer.transformation.MRPatterns.ReactionName
ARYL_ALDEHYDE_DEHYDROGENATION - biotransformer.transformation.MRPatterns.ReactionName
ARYL_ALDEHYDE_OXIDATION - biotransformer.transformation.MRPatterns.ReactionName
ARYLACETAMDE_DEACETYLATION - biotransformer.transformation.MRPatterns.ReactionName
ARYLAMINE_N_ACETYLATION_PATTERN1 - biotransformer.transformation.MRPatterns.ReactionName
  Phase II reactions
ARYLAMINE_N_ACETYLATION_PATTERN2 - biotransformer.transformation.MRPatterns.ReactionName
ARYLAMINE_N_ACETYLATION_PATTERN3 - biotransformer.transformation.MRPatterns.ReactionName
ARYLDIALKYLPHOSPHATE_PHOSPHOHYDROLYSIS - biotransformer.transformation.MRPatterns.ReactionName
ARYLSULFATE_SULFOHYDROLYSIS - biotransformer.transformation.MRPatterns.ReactionName
AssignChemicalClasses(IAtomContainer) - Static method in class biotransformer.utils.ChemicalClassFinder
atomContainerInclusionHolds(IAtomContainerSet, IAtomContainer) - Static method in class biotransformer.utils.ChemStructureExplorer
  Given a molecule (or AtomContainer) M and an AtomContainerSet S, check whether M is included in the set S.
AZIDE_STANDARDIZATION - biotransformer.transformation.MRPatterns.ReactionName
  Standardization reactions
AZOLE_N_GLUCURONIDATION_PATTERN1 - biotransformer.transformation.MRPatterns.ReactionName
AZOLE_N_GLUCURONIDATION_PATTERN2 - biotransformer.transformation.MRPatterns.ReactionName
AZOLE_N_GLUCURONIDATION_PATTERN3 - biotransformer.transformation.MRPatterns.ReactionName
AZOLE_N_GLUCURONIDATION_PATTERN4 - biotransformer.transformation.MRPatterns.ReactionName
AZOLE_N_GLUCURONIDATION_PATTERN5 - biotransformer.transformation.MRPatterns.ReactionName
AZOLE_N_GLUCURONIDATION_PATTERN6 - biotransformer.transformation.MRPatterns.ReactionName
AZOREDUCTION_TO_PRIMARY_AMINE - biotransformer.transformation.MRPatterns.ReactionName

A B C D E F G H I K L M N O P Q R S T U V _
All Classes All Packages