## Uses of Class
biotransformer.transformation.MetabolicPathway.MPathwayName

Packages that use MetabolicPathway.MPathwayName
biotransformer.biosystems
biotransformer.btransformers
biotransformer.transformation
biotransformer.utils

### Uses of MetabolicPathway.MPathwayName in biotransformer.biosystems

Methods in biotransformer.biosystems that return types with arguments of type MetabolicPathway.MPathwayName
`java.util.LinkedHashMap<MetabolicPathway.MPathwayName,​java.util.ArrayList<Enzyme>>` BioSystem.`getMetPathwaysHash()`

### Uses of MetabolicPathway.MPathwayName in biotransformer.btransformers

Methods in biotransformer.btransformers with parameters of type MetabolicPathway.MPathwayName
`java.util.ArrayList<Biotransformation>` Biotransformer.`applyPathwaySpecificBiotransformationChain​(org.openscience.cdk.interfaces.IAtomContainer target, MetabolicPathway.MPathwayName pathwayName, boolean preprocess, boolean filter, int nr_of_steps)`
`java.util.ArrayList<Biotransformation>` Biotransformer.`applyPathwaySpecificBiotransformations​(org.openscience.cdk.interfaces.IAtomContainer target, MetabolicPathway.MPathwayName pathwayName, boolean preprocess, boolean filter, java.lang.Double scoreThreshold)` Predicts the metabolism of a compound for a specific pathway, and returns metabolites with a minimal given score threshold.
`java.util.ArrayList<Biotransformation>` Biotransformer.`applyPathwaySpecificBiotransformations​(org.openscience.cdk.interfaces.IAtomContainerSet targets, MetabolicPathway.MPathwayName pathwayName, boolean preprocess, boolean filter, java.lang.Double scoreThreshold)` Predicts the metabolism of a compound for a specific pathway, and returns metabolites with a minimal given score threshold.
`java.util.ArrayList<Biotransformation>` Biotransformer.`applyPathwaySpecificBiotransformationsChain​(org.openscience.cdk.interfaces.IAtomContainer target, MetabolicPathway.MPathwayName pathwayName, boolean preprocess, boolean filter, int nr_of_steps, java.lang.Double scoreThreshold)`
`java.util.ArrayList<Biotransformation>` Biotransformer.`applyPathwaySpecificBiotransformationsChain​(org.openscience.cdk.interfaces.IAtomContainerSet targets, MetabolicPathway.MPathwayName pathwayName, boolean preprocess, boolean filter, int nr_of_steps, java.lang.Double scoreThreshold)`

### Uses of MetabolicPathway.MPathwayName in biotransformer.transformation

Methods in biotransformer.transformation that return MetabolicPathway.MPathwayName
`static MetabolicPathway.MPathwayName` MetabolicPathway.MPathwayName.`valueOf​(java.lang.String name)` Returns the enum constant of this type with the specified name.
`static MetabolicPathway.MPathwayName[]` MetabolicPathway.MPathwayName.`values()` Returns an array containing the constants of this enum type, in the order they are declared.

Constructors in biotransformer.transformation with parameters of type MetabolicPathway.MPathwayName
`MetabolicPathway​(MetabolicPathway.MPathwayName pathwayName, BioSystem bsys)`

### Uses of MetabolicPathway.MPathwayName in biotransformer.utils

Methods in biotransformer.utils with parameters of type MetabolicPathway.MPathwayName
`java.util.ArrayList<Biotransformation>` HumanSuperBioTransformer.`applyPathwaySpecificBiotransformations​(org.openscience.cdk.interfaces.IAtomContainer molecule, MetabolicPathway.MPathwayName pathway, boolean preprocess, boolean filter, double scoreThreshold)`