A B C D E F G H I K L M N O P Q R S T U V _
All Classes All Packages

## M

M_HYDROXYLATION_OF_MONOSUBSTITUTED_BENZENE - biotransformer.transformation.MRPatterns.ReactionName
main(String[]) - Static method in class biotransformer.biosystems.BioSystem
main(String[]) - Static method in class biotransformer.transformation.MetabolicReaction
main(String[]) - Static method in class biotransformer.transformation.MRPatterns
main(String[]) - Static method in class biotransformer.utils.BioTransformerDBBuilder
main(String[]) - Static method in class biotransformer.utils.ChemicalClassFinder
main(String[]) - Static method in class biotransformer.utils.ChemSearcher
main(String[]) - Static method in class biotransformer.utils.CompoundDictionary
main(String[]) - Static method in class biotransformer.utils.ErdbTask
main(String[]) - Static method in class executable.BiotransformerExecutable
mapper - Variable in class biotransformer.btransformers.Biotransformer
MASS - biotransformer.utils.MetaboliteFinder.FinderOption
MASSFORMULA - biotransformer.utils.MetaboliteFinder.FinderOption
MEDIUM_CHAIN_ACYL_COA_DEHYDROGENATION - biotransformer.transformation.MRPatterns.ReactionName
MetabolicPathway - Class in biotransformer.transformation
MetabolicPathway(MetabolicPathway.MPathwayName, BioSystem) - Constructor for class biotransformer.transformation.MetabolicPathway
MetabolicPathway.MPathwayName - Enum in biotransformer.transformation
MetabolicReaction - Class in biotransformer.transformation
  The first reactantsSMARTS is the main one, for which indices might be retrieved to apply position-specific transformations.
MetabolicReaction(MRPatterns.ReactionName) - Constructor for class biotransformer.transformation.MetabolicReaction
MetabolicReaction(MRPatterns.ReactionName, SMIRKSManager) - Constructor for class biotransformer.transformation.MetabolicReaction
MetabolicReaction(MRPatterns.ReactionName, String, String, String, ArrayList<String>, ArrayList<String>, SMIRKSManager) - Constructor for class biotransformer.transformation.MetabolicReaction
MetabolicReaction(MRPatterns.ReactionName, String, String, ArrayList<String>, ArrayList<String>, SMIRKSManager) - Constructor for class biotransformer.transformation.MetabolicReaction
MetabolicReaction(MRPatterns.ReactionName, String, ArrayList<String>, ArrayList<String>, SMIRKSManager) - Constructor for class biotransformer.transformation.MetabolicReaction
MetabolicReaction(String) - Constructor for class biotransformer.transformation.MetabolicReaction
MetabolicReaction(String, SMIRKSManager) - Constructor for class biotransformer.transformation.MetabolicReaction
MetaboliteFinder - Class in biotransformer.utils
MetaboliteFinder() - Constructor for class biotransformer.utils.MetaboliteFinder
MetaboliteFinder.FinderOption - Enum in biotransformer.utils
metabolizeWithEnzyme(IAtomContainer, Enzyme.EnzymeName, boolean, boolean, double) - Method in class biotransformer.btransformers.Biotransformer
metabolizeWithEnzyme(IAtomContainer, Enzyme, boolean, boolean, double) - Method in class biotransformer.btransformers.Biotransformer
metabolizeWithEnzyme(IAtomContainer, Enzyme, boolean, boolean, int, double) - Method in class biotransformer.btransformers.Biotransformer
metabolizeWithEnzyme(IAtomContainerSet, Enzyme, boolean, boolean, double) - Method in class biotransformer.btransformers.Biotransformer
metabolizeWithEnzymes(IAtomContainer, ArrayList<Enzyme>, boolean, boolean, Double) - Method in class biotransformer.btransformers.Biotransformer
metabolizeWithEnzymes(IAtomContainerSet, ArrayList<Enzyme>, boolean, boolean, double) - Method in class biotransformer.btransformers.Biotransformer
metabolizeWithEnzymesBreadthFirst(IAtomContainer, ArrayList<Enzyme>, boolean, boolean, int, Double) - Method in class biotransformer.btransformers.Biotransformer
metabolizeWithEnzymesBreadthFirst(IAtomContainerSet, ArrayList<Enzyme>, boolean, boolean, int, Double) - Method in class biotransformer.btransformers.Biotransformer
metabolizeWithEnzymesDephtFirst(IAtomContainer, ArrayList<Enzyme>, boolean, boolean, int, Double) - Method in class biotransformer.btransformers.Biotransformer
METHYLARSONITE_O_METHYLATION - biotransformer.transformation.MRPatterns.ReactionName
METHYLENE_HYDROXYLATION - biotransformer.transformation.MRPatterns.ReactionName
METHYLENEDIOXY_RING_OPENING - biotransformer.transformation.MRPatterns.ReactionName
MICROBIAL_POLYPHENOL_METABOLISM - biotransformer.transformation.MetabolicPathway.MPathwayName
MONOLYSOCARDIOLIPIN_ACYLATION - biotransformer.transformation.MRPatterns.ReactionName
MReactionSets - Class in biotransformer.transformation
MReactionSets() - Constructor for class biotransformer.transformation.MReactionSets
MReactionsFilter - Class in biotransformer.transformation
MReactionsFilter() - Constructor for class biotransformer.transformation.MReactionsFilter
MReactionsFilter(BioSystem.BioSystemName) - Constructor for class biotransformer.transformation.MReactionsFilter
mrFilter - Variable in class biotransformer.biosystems.BioSystem
MRPatterns - Class in biotransformer.transformation
MRPatterns() - Constructor for class biotransformer.transformation.MRPatterns
MRPatterns.ReactionName - Enum in biotransformer.transformation

A B C D E F G H I K L M N O P Q R S T U V _
All Classes All Packages