## Uses of Class
biotransformer.transformation.MRPatterns.ReactionName

Packages that use MRPatterns.ReactionName
biotransformer.transformation

### Uses of MRPatterns.ReactionName in biotransformer.transformation

Fields in biotransformer.transformation with type parameters of type MRPatterns.ReactionName
`java.util.LinkedHashMap<MRPatterns.ReactionName,​MRPatterns.ReactionName[]>` MReactionsFilter.`btPriorityHash`

Methods in biotransformer.transformation that return MRPatterns.ReactionName
`MRPatterns.ReactionName` Biotransformation.`getReactionType()`
`static MRPatterns.ReactionName` MRPatterns.ReactionName.`valueOf​(java.lang.String name)` Returns the enum constant of this type with the specified name.
`static MRPatterns.ReactionName[]` MRPatterns.ReactionName.`values()` Returns an array containing the constants of this enum type, in the order they are declared.

Methods in biotransformer.transformation that return types with arguments of type MRPatterns.ReactionName
`java.util.LinkedHashMap<MRPatterns.ReactionName,​MetabolicReaction>` MReactionsFilter.`filterReactions​(java.util.ArrayList<MetabolicReaction> reactions)`
`static java.util.LinkedHashMap<MRPatterns.ReactionName,​MetabolicReaction>` MReactionsFilter.`filterReactions​(java.util.ArrayList<MetabolicReaction> reactions, java.util.LinkedHashMap<MRPatterns.ReactionName,​MRPatterns.ReactionName[]> btph)`
`java.util.LinkedHashMap<MRPatterns.ReactionName,​MetabolicReaction>` MReactionsFilter.`filterReactions​(java.util.LinkedHashMap<MRPatterns.ReactionName,​MetabolicReaction> reactions)`
`static java.util.LinkedHashMap<MRPatterns.ReactionName,​MetabolicReaction>` MReactionsFilter.`filterReactions​(java.util.LinkedHashMap<MRPatterns.ReactionName,​MetabolicReaction> reactions, java.util.LinkedHashMap<MRPatterns.ReactionName,​MRPatterns.ReactionName[]> btph)`
`java.util.LinkedHashMap<MRPatterns.ReactionName,​MetabolicReaction>` MReactionsFilter.`filterReactionsLSM​(java.util.LinkedHashMap<java.lang.String,​MetabolicReaction> reactions)`

Method parameters in biotransformer.transformation with type arguments of type MRPatterns.ReactionName
`static java.util.LinkedHashMap<MRPatterns.ReactionName,​MetabolicReaction>` MReactionsFilter.`filterReactions​(java.util.ArrayList<MetabolicReaction> reactions, java.util.LinkedHashMap<MRPatterns.ReactionName,​MRPatterns.ReactionName[]> btph)`
`java.util.LinkedHashMap<MRPatterns.ReactionName,​MetabolicReaction>` MReactionsFilter.`filterReactions​(java.util.LinkedHashMap<MRPatterns.ReactionName,​MetabolicReaction> reactions)`
`static java.util.LinkedHashMap<MRPatterns.ReactionName,​MetabolicReaction>` MReactionsFilter.`filterReactions​(java.util.LinkedHashMap<MRPatterns.ReactionName,​MetabolicReaction> reactions, java.util.LinkedHashMap<MRPatterns.ReactionName,​MRPatterns.ReactionName[]> btph)`

Constructors in biotransformer.transformation with parameters of type MRPatterns.ReactionName
`Biotransformation​(org.openscience.cdk.interfaces.IAtomContainerSet substrates, MRPatterns.ReactionName reactionType, Enzyme.EnzymeName enzymeName, org.openscience.cdk.interfaces.IAtomContainerSet products)`
`Biotransformation​(org.openscience.cdk.interfaces.IAtomContainerSet substrates, MRPatterns.ReactionName reactionType, java.util.ArrayList<Enzyme.EnzymeName> enzymeNames, org.openscience.cdk.interfaces.IAtomContainerSet products, BioSystem.BioSystemName bsysName)`
`Biotransformation​(org.openscience.cdk.interfaces.IAtomContainerSet substrates, MRPatterns.ReactionName reactionType, java.util.ArrayList<Enzyme.EnzymeName> enzymeNames, org.openscience.cdk.interfaces.IAtomContainerSet products, java.lang.Double score, BioSystem.BioSystemName bsysName)`
`MetabolicReaction​(MRPatterns.ReactionName r_name)`
`MetabolicReaction​(MRPatterns.ReactionName r_name, ambit2.smarts.SMIRKSManager smrkMan)`
`MetabolicReaction​(MRPatterns.ReactionName r_name, java.lang.String commmonName, java.lang.String reactionsBTMRID, java.lang.String reactionSMIRKS, java.util.ArrayList<java.lang.String> reactantsSMARTS, java.util.ArrayList<java.lang.String> negativeReactantsSMARTS, ambit2.smarts.SMIRKSManager smrkMan)`
`MetabolicReaction​(MRPatterns.ReactionName r_name, java.lang.String commmonName, java.lang.String reactionSMIRKS, java.util.ArrayList<java.lang.String> reactantsSMARTS, java.util.ArrayList<java.lang.String> negativeReactantsSMARTS, ambit2.smarts.SMIRKSManager smrkMan)`
`MetabolicReaction​(MRPatterns.ReactionName r_name, java.lang.String reactionSMIRKS, java.util.ArrayList<java.lang.String> reactantsSMARTS, java.util.ArrayList<java.lang.String> negativeReactantsSMARTS, ambit2.smarts.SMIRKSManager smrkMan)`