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## D

D_2_HYDROXY_ACID_DEHYDROGENATION - biotransformer.transformation.MRPatterns.ReactionName
D_GLYCOSIDE_HYDROLYSIS - biotransformer.transformation.MRPatterns.ReactionName
DEARYLATION_OF_ORGANOPHOSPHOSULFUR_COMPOUNDS_PATTERN1 - biotransformer.transformation.MRPatterns.ReactionName
DEARYLATION_OF_ORGANOPHOSPHOSULFUR_COMPOUNDS_PATTERN2 - biotransformer.transformation.MRPatterns.ReactionName
DECARBOXYLASE - biotransformer.biomolecule.Enzyme.EnzymeName
DECARBOXYLATION_OF_FUSED_BENZENE - biotransformer.transformation.MRPatterns.ReactionName
Deglycolyzer - Class in biotransformer.btransformers
Deglycolyzer(BioSystem.BioSystemName) - Constructor for class biotransformer.btransformers.Deglycolyzer
DEGLYCOSYLATION_PATTERN1 - biotransformer.transformation.MRPatterns.ReactionName
DEGLYCOSYLATION_PATTERN10 - biotransformer.transformation.MRPatterns.ReactionName
DEGLYCOSYLATION_PATTERN11 - biotransformer.transformation.MRPatterns.ReactionName
DEGLYCOSYLATION_PATTERN12 - biotransformer.transformation.MRPatterns.ReactionName
DEGLYCOSYLATION_PATTERN13 - biotransformer.transformation.MRPatterns.ReactionName
DEGLYCOSYLATION_PATTERN15 - biotransformer.transformation.MRPatterns.ReactionName
DEGLYCOSYLATION_PATTERN16 - biotransformer.transformation.MRPatterns.ReactionName
DEGLYCOSYLATION_PATTERN17 - biotransformer.transformation.MRPatterns.ReactionName
DEGLYCOSYLATION_PATTERN18 - biotransformer.transformation.MRPatterns.ReactionName
DEGLYCOSYLATION_PATTERN19 - biotransformer.transformation.MRPatterns.ReactionName
DEGLYCOSYLATION_PATTERN2 - biotransformer.transformation.MRPatterns.ReactionName
DEGLYCOSYLATION_PATTERN20 - biotransformer.transformation.MRPatterns.ReactionName
DEGLYCOSYLATION_PATTERN21 - biotransformer.transformation.MRPatterns.ReactionName
DEGLYCOSYLATION_PATTERN22 - biotransformer.transformation.MRPatterns.ReactionName
DEGLYCOSYLATION_PATTERN23 - biotransformer.transformation.MRPatterns.ReactionName
DEGLYCOSYLATION_PATTERN24 - biotransformer.transformation.MRPatterns.ReactionName
DEGLYCOSYLATION_PATTERN25 - biotransformer.transformation.MRPatterns.ReactionName
DEGLYCOSYLATION_PATTERN26 - biotransformer.transformation.MRPatterns.ReactionName
DEGLYCOSYLATION_PATTERN27 - biotransformer.transformation.MRPatterns.ReactionName
DEGLYCOSYLATION_PATTERN28 - biotransformer.transformation.MRPatterns.ReactionName
DEGLYCOSYLATION_PATTERN29 - biotransformer.transformation.MRPatterns.ReactionName
DEGLYCOSYLATION_PATTERN3 - biotransformer.transformation.MRPatterns.ReactionName
DEGLYCOSYLATION_PATTERN30 - biotransformer.transformation.MRPatterns.ReactionName
DEGLYCOSYLATION_PATTERN31 - biotransformer.transformation.MRPatterns.ReactionName
DEGLYCOSYLATION_PATTERN32 - biotransformer.transformation.MRPatterns.ReactionName
DEGLYCOSYLATION_PATTERN33 - biotransformer.transformation.MRPatterns.ReactionName
DEGLYCOSYLATION_PATTERN34 - biotransformer.transformation.MRPatterns.ReactionName
DEGLYCOSYLATION_PATTERN35 - biotransformer.transformation.MRPatterns.ReactionName
DEGLYCOSYLATION_PATTERN36 - biotransformer.transformation.MRPatterns.ReactionName
DEGLYCOSYLATION_PATTERN37 - biotransformer.transformation.MRPatterns.ReactionName
DEGLYCOSYLATION_PATTERN38 - biotransformer.transformation.MRPatterns.ReactionName
DEGLYCOSYLATION_PATTERN39 - biotransformer.transformation.MRPatterns.ReactionName
DEGLYCOSYLATION_PATTERN4 - biotransformer.transformation.MRPatterns.ReactionName
DEGLYCOSYLATION_PATTERN40 - biotransformer.transformation.MRPatterns.ReactionName
DEGLYCOSYLATION_PATTERN41 - biotransformer.transformation.MRPatterns.ReactionName
DEGLYCOSYLATION_PATTERN42 - biotransformer.transformation.MRPatterns.ReactionName
DEGLYCOSYLATION_PATTERN43 - biotransformer.transformation.MRPatterns.ReactionName
DEGLYCOSYLATION_PATTERN5 - biotransformer.transformation.MRPatterns.ReactionName
DEGLYCOSYLATION_PATTERN6 - biotransformer.transformation.MRPatterns.ReactionName
DEGLYCOSYLATION_PATTERN7 - biotransformer.transformation.MRPatterns.ReactionName
DEGLYCOSYLATION_PATTERN8 - biotransformer.transformation.MRPatterns.ReactionName
DEGLYCOSYLATION_PATTERN9 - biotransformer.transformation.MRPatterns.ReactionName
DEGRADATION_OF_ANTHOCYANIDIN_TO_CHALCONE - biotransformer.transformation.MRPatterns.ReactionName
DEGRADATION_OF_DIHYDROXYENTERODIOL_TO_DIHYDROXYENTEROLACTONE - biotransformer.transformation.MRPatterns.ReactionName
DEGRADATION_OF_DIHYDROXYENTERODIOL_TO_ENTERODIOL - biotransformer.transformation.MRPatterns.ReactionName
DEGRADATION_OF_DIHYDROXYENTEROLACTONE_TO_ENTEROLACTONE - biotransformer.transformation.MRPatterns.ReactionName
DEGRADATION_OF_ENTERODIOL_ENTEROLACTONE - biotransformer.transformation.MRPatterns.ReactionName
DEGRADATION_OF_LARICIRESINOL_TO_SECOISOLARICIRESINOL - biotransformer.transformation.MRPatterns.ReactionName
DEGRADATION_OF_MATAIRESINOL_TO_DIHYDROXYENTEROLACTONE - biotransformer.transformation.MRPatterns.ReactionName
DEGRADATION_OF_MEDIORESINOL_TO_PINORESINOL - biotransformer.transformation.MRPatterns.ReactionName
DEGRADATION_OF_PHENYLVALEROLACTONE - biotransformer.transformation.MRPatterns.ReactionName
DEGRADATION_OF_PINORESINOL_TO_LARICIRESINOL - biotransformer.transformation.MRPatterns.ReactionName
DEGRADATION_OF_SECOISOLARICIRESINOL_TO_DIHYDROXYENTERODIOL - biotransformer.transformation.MRPatterns.ReactionName
DEGRADATION_OF_SESAMIN_1 - biotransformer.transformation.MRPatterns.ReactionName
DEGRADATION_OF_SESAMIN_2 - biotransformer.transformation.MRPatterns.ReactionName
DEGRADATION_OF_SESAMIN_3 - biotransformer.transformation.MRPatterns.ReactionName
DEGRADATION_TO_PHLOROGCLUCINOL_ALDEHYDE - biotransformer.transformation.MRPatterns.ReactionName
DEHYDDROGENATION_OF_PYRROLIZIDINE_ALKALOIDS - biotransformer.transformation.MRPatterns.ReactionName
DEHYDROGENATION_OF_4_ALKYL_SUBSTITUTED_14_DIHYDROPYRIDINES - biotransformer.transformation.MRPatterns.ReactionName
DEHYDROGENATION_OF_4_ARYL_SUBSTITUTED_14_DIHYDROPYRIDINES - biotransformer.transformation.MRPatterns.ReactionName
DEHYDROGENATION_OF_ALPHA_BETA_UNSATURATED_ALDEHYDE_CARBOXYLIC_ACID_OR_ESTER - biotransformer.transformation.MRPatterns.ReactionName
DEHYDROGENATION_OF_ALPHA_BETA_UNSATURATED_AMIDE - biotransformer.transformation.MRPatterns.ReactionName
DEHYDROGENATION_OF_FUSED_PYRROLIDINES - biotransformer.transformation.MRPatterns.ReactionName
DEHYDROGENATION_OF_PRIMARY_ALCOHOL_PATTERN1 - biotransformer.transformation.MRPatterns.ReactionName
DEHYDROGENATION_OF_PRIMARY_ALCOHOL_PATTERN2 - biotransformer.transformation.MRPatterns.ReactionName
DEHYDROGENATION_OF_SECONDARY_ALCOHOL_PATTERN1 - biotransformer.transformation.MRPatterns.ReactionName
DEHYDROGENATION_OF_SECONDARY_ALCOHOL_PATTERN2 - biotransformer.transformation.MRPatterns.ReactionName
DEHYDROHALOGENATION - biotransformer.transformation.MRPatterns.ReactionName
DEHYDROXYLASE - biotransformer.biomolecule.Enzyme.EnzymeName
DEHYDROXYLATION_OF_DIBENZOPYRANONE_PATTERN1 - biotransformer.transformation.MRPatterns.ReactionName
DEHYDROXYLATION_OF_DIBENZOPYRANONE_PATTERN2 - biotransformer.transformation.MRPatterns.ReactionName
DEHYDROXYLATION_OF_DIBENZOPYRANONE_PATTERN3 - biotransformer.transformation.MRPatterns.ReactionName
DEHYDROXYLATION_OF_DIBENZOPYRANONE_PATTERN4 - biotransformer.transformation.MRPatterns.ReactionName
DEHYDROXYLATION_OF_HYDROXY_PHENYL_AND_BENZOIC_ACICDS_PATTERN1 - biotransformer.transformation.MRPatterns.ReactionName
DEHYDROXYLATION_OF_HYDROXY_PHENYL_AND_BENZOIC_ACICDS_PATTERN2 - biotransformer.transformation.MRPatterns.ReactionName
DELTA_14_STEROL_REDUCTION - biotransformer.transformation.MRPatterns.ReactionName
DELTA_7_STEROL_56_DESATURATION - biotransformer.transformation.MRPatterns.ReactionName
DELTA_7_STEROL_56_SATURATION - biotransformer.transformation.MRPatterns.ReactionName
DEMETHYLASE - biotransformer.biomolecule.Enzyme.EnzymeName
DEMETHYLATION_OF_METHOXY_PHENYL_AND_BENZOIC_ACIDS_PATTERN1 - biotransformer.transformation.MRPatterns.ReactionName
DEMETHYLATION_OF_METHOXY_PHENYL_AND_BENZOIC_ACIDS_PATTERN2 - biotransformer.transformation.MRPatterns.ReactionName
DEMETHYLATION_OF_VANILLIC_ACID - biotransformer.transformation.MRPatterns.ReactionName
DENITROSATION - biotransformer.transformation.MRPatterns.ReactionName
DEOXYBENZOIN_DEGRADATION - biotransformer.transformation.MRPatterns.ReactionName
DEPSIDE_HYDROLYSIS - biotransformer.transformation.MRPatterns.ReactionName
DESTHIOPROPYLATION - biotransformer.transformation.MRPatterns.ReactionName
DESULFURATION - biotransformer.transformation.MRPatterns.ReactionName
DESULFURATION_OF_ORGANOISOTHIOCYANATE - biotransformer.transformation.MRPatterns.ReactionName
DESULFURATION_OF_ORGANOPHOSPHORODITHIOATES - biotransformer.transformation.MRPatterns.ReactionName
DESULFURATION_OF_ORGANOPHOSPHOROTHIOATES - biotransformer.transformation.MRPatterns.ReactionName
DESULFURIZATION_OF_THIOAMIDE_INTO_AMIDE - biotransformer.transformation.MRPatterns.ReactionName
DESULPHURIZATION_OF_PHOSPHOR - biotransformer.transformation.MRPatterns.ReactionName
DIACYLGLYCEROL_O_ACYLATION - biotransformer.transformation.MRPatterns.ReactionName
DIAZO_STANDARDIZATION - biotransformer.transformation.MRPatterns.ReactionName
DIAZONIUM_STANDARDIZATION - biotransformer.transformation.MRPatterns.ReactionName
DIENELACTONE_HYDROLYSIS - biotransformer.transformation.MRPatterns.ReactionName
DIGALACTOSYLCERAMIDE_3P_SULFATION - biotransformer.transformation.MRPatterns.ReactionName
DIGALACTOSYLCERAMIDE_GALACTO_HYDROLYSIS_PATTERN1 - biotransformer.transformation.MRPatterns.ReactionName
DIGALACTOSYLCERAMIDE_GALACTO_HYDROLYSIS_PATTERN2 - biotransformer.transformation.MRPatterns.ReactionName
DIGALACTOSYLDIACYLGLYCEROL_GALACTO_HYDROLYSIS - biotransformer.transformation.MRPatterns.ReactionName
DIGALACTOSYLDIACYLGLYCEROL_SYNTHESIS - biotransformer.transformation.MRPatterns.ReactionName
DIHALO_ELIMINATION - biotransformer.transformation.MRPatterns.ReactionName
DIHYDROCHALCONE_DEGRADATION_PATTERN1 - biotransformer.transformation.MRPatterns.ReactionName
DIHYDROCHALCONE_DEGRADATION_PATTERN2 - biotransformer.transformation.MRPatterns.ReactionName
DIHYDROCHALCONE_DEGRADATION_PATTERN3 - biotransformer.transformation.MRPatterns.ReactionName
DIHYDROCHALCONE_HYDROLYSIS - biotransformer.transformation.MRPatterns.ReactionName
DIHYDROXYLATION_OF_DOUBLE_BOND - biotransformer.transformation.MRPatterns.ReactionName
DINUCLEOTIDE_HYDROLYSIS - biotransformer.transformation.MRPatterns.ReactionName
display() - Method in class biotransformer.biomolecule.Enzyme
display() - Method in class biotransformer.transformation.Biotransformation
display() - Method in class biotransformer.transformation.MetabolicReaction
DITHIOCARBAMIC_ACID_S_METHYLATION - biotransformer.transformation.MRPatterns.ReactionName
divideSdfFile(String, int) - Static method in class biotransformer.utils.FileUtilities

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