# Hierarchy For All Packages

Package Hierarchies:

- biotransformer.biomolecule,
- biotransformer.biosystems,
- biotransformer.btransformers,
- biotransformer.esaprediction,
- biotransformer.fingerprint,
- biotransformer.transformation,
- biotransformer.utils,
- biotransformer.version,
- executable

## Class Hierarchy

- java.lang.Object
  - biotransformer.biosystems.BioSystem
    - biotransformer.biosystems.EnvMicro
    - biotransformer.biosystems.Human
  - biotransformer.transformation.Biotransformation
  - biotransformer.btransformers.Biotransformer
    - biotransformer.btransformers.Cyp450BTransformer
    - biotransformer.btransformers.Deglycolyzer
    - biotransformer.btransformers.ECBasedBTransformer
    - biotransformer.btransformers.EnvMicroBTransformer
    - biotransformer.btransformers.HGutBTransformer
    - biotransformer.btransformers.Phase2BTransformer
  - biotransformer.utils.BioTransformerDBBuilder
  - executable.BiotransformerExecutable
  - biotransformer.utils.ChemdbRest
  - biotransformer.utils.ChemicalClassFinder
  - biotransformer.utils.ChemSearcher
  - biotransformer.utils.ChemStructureExplorer
  - biotransformer.fingerprint.ChemStructureFingerprinter
  - biotransformer.utils.ChemStructureManipulator
  - biotransformer.utils.ChemStructureSimilarity
  - biotransformer.utils.CompoundDictionary
  - biotransformer.biomolecule.Enzyme
  - biotransformer.utils.ErdbTask
  - biotransformer.esaprediction.ESSpecificityPredictor
  - biotransformer.utils.FeatureGenerator
  - biotransformer.utils.FileUtilities
  - biotransformer.utils.HumanSuperBioTransformer
  - biotransformer.transformation.MetabolicPathway
  - biotransformer.transformation.MetabolicReaction
  - biotransformer.utils.MetaboliteFinder
  - biotransformer.transformation.MReactionSets
  - biotransformer.transformation.MReactionsFilter
  - biotransformer.transformation.MRPatterns
  - biotransformer.fingerprint.SFingerprint
  - biotransformer.utils.Statistics
  - biotransformer.biomolecule.StructuralChemicalCategory
  - biotransformer.utils.Utilities
  - biotransformer.version.Version

## Enum Hierarchy

- java.lang.Object
  - java.lang.Enum<E> (implements java.lang.Comparable<T>, java.io.Serializable)
    - biotransformer.biosystems.BioSystem.BioSystemName
    - biotransformer.utils.ChemicalClassFinder.ChemicalClassName
    - biotransformer.biomolecule.Enzyme.EnzymeName
    - biotransformer.transformation.MetabolicPathway.MPathwayName
    - biotransformer.utils.MetaboliteFinder.FinderOption
    - biotransformer.transformation.MRPatterns.ReactionName
    - biotransformer.biomolecule.StructuralChemicalCategory.SCCategoryName