# Vignettes and other documentation

## Vignettes from package 'YAPSA'

YAPSA::YAPSA |  | 1. Usage of YAPSA | HTML | source | R code
YAPSA::vignette_signature_specific_cutoffs |  | 2. Signature analysis with signature-specific cutoffs | HTML | source | R code
YAPSA::vignette_confidenceIntervals |  | 3. Confidence Intervals | HTML | source | R code
YAPSA::vignette_stratifiedAnalysis |  | 4. Stratified Analysis of Mutational Signatures | HTML | source | R code
YAPSA::vignettes_Indel |  | 5. Indel signature analysis | HTML | source | R code
YAPSA::vignette_exomes |  | 6. Usage of YAPSA for WES data | HTML | source | R code