# Generated by roxygen2: do not edit by hand

S3method(nucleosomeEnrichment,GRanges)
S3method(nucleosomeEnrichment,Vmat)
S3method(plotVmat,GRanges)
S3method(plotVmat,Vmat)
S3method(plotVmat,VmatList)
S3method(plotVmat,default)
S3method(plotVmat,list)
S3method(sampleGRanges,GRanges)
export(alignToTSS)
export(computeVmat)
export(deconvolveBidirectionalPromoters)
export(getFragmentsDistribution)
export(importPEBamFiles)
export(normalizeVmat)
export(nucleosomeEnrichment)
export(plotFootprint)
export(plotProfile)
export(plotVmat)
export(sampleGRanges)
export(shiftATACGranges)
export(shuffleVmat)
export(theme_ggplot2)
import(GenomeInfoDb)
import(GenomicAlignments)
import(GenomicRanges)
import(IRanges)
import(RColorBrewer)
import(Rsamtools)
import(S4Vectors)
import(ggplot2)
import(magrittr)
import(parallel)
import(reshape2)
importFrom(cowplot,plot_grid)
importFrom(graphics,hist)
importFrom(methods,as)
importFrom(methods,is)
importFrom(stats,qt)
importFrom(zoo,rollmean)
