Package: Voyager
Type: Package
Title: From geospatial to spatial omics
Version: 1.0.3
Authors@R: 
    c(person("Lambda", "Moses", email = "dlu2@caltech.edu", 
    role = c("aut", "cre"),
    comment = c(ORCID = "0000-0002-7092-9427")),
    person("Kayla", "Jackson", email = "kaylajac@caltech.edu",
    role = c("aut"),
    comment = c(ORCID = "0000-0001-6483-0108")),
    person("Lior", "Pachter", email = "lpachter@caltech.edu",
    role = c("aut", "rev"),
    comment = c(ORCID = "0000-0002-9164-6231")))
Description: SpatialFeatureExperiment (SFE) is a new S4 class for working with spatial single-cell genomics data. The voyager package implements basic
    exploratory spatial data analysis (ESDA) methods for SFE. This first version
    supports univariate global spatial ESDA methods such as Moran's I, 
    permutation testing for Moran's I, and correlograms. The Voyager package also implements
    plotting functions to plot SFE data and ESDA results. Multivariate ESDA
    and univariate local metrics will be added in later versions.
Imports: BiocParallel, bluster, ggnewscale, ggplot2, Matrix, methods,
        patchwork, rlang, S4Vectors, scales, scico, sf,
        SingleCellExperiment, SpatialExperiment,
        SpatialFeatureExperiment, spdep, stats, SummarizedExperiment
Suggests: BiocSingular, BiocStyle, cowplot, dbscan, ExperimentHub,
        hexbin, knitr, rmarkdown, scater, scattermore, scran, SFEData,
        sparseMatrixStats, testthat (>= 3.0.0), vdiffr
License: Artistic-2.0
Encoding: UTF-8
RoxygenNote: 7.2.1
Config/testthat/edition: 3
Depends: R (>= 4.2.0)
biocViews: GeneExpression, Spatial, Transcriptomics, Visualization
VignetteBuilder: knitr
URL: https://github.com/pachterlab/voyager
BugReports: https://github.com/pachterlab/voyager/issues
git_url: https://git.bioconductor.org/packages/Voyager
git_branch: RELEASE_3_16
git_last_commit: 3e4c55c
git_last_commit_date: 2022-11-02
Date/Publication: 2022-11-03
NeedsCompilation: no
Packaged: 2022-11-03 22:18:39 UTC; biocbuild
Author: Lambda Moses [aut, cre] (<https://orcid.org/0000-0002-7092-9427>),
  Kayla Jackson [aut] (<https://orcid.org/0000-0001-6483-0108>),
  Lior Pachter [aut, rev] (<https://orcid.org/0000-0002-9164-6231>)
Maintainer: Lambda Moses <dlu2@caltech.edu>
Built: R 4.2.2; ; 2022-11-06 14:19:33 UTC; unix
