# From geospatial to spatial omics

## Documentation for package ‘Voyager’ version 1.0.3

- DESCRIPTION file.
- User guides, package vignettes and other documentation.

## Help Pages

annotGeometryMoransI | Univariate spatial stiatistics
annotGeometryUnivariate | Univariate spatial stiatistics
calculateMoransI | Univariate spatial stiatistics
calculateMoransI-method | Univariate spatial stiatistics
calculateUnivariate | Univariate spatial stiatistics
calculateUnivariate-method | Univariate spatial stiatistics
clusterCorrelograms | Find clusters of correlogram patterns
clusterMoranPlot | Find clusters on the Moran plot
colDataMoransI | Univariate spatial stiatistics
colDataUnivariate | Univariate spatial stiatistics
colFeatureData | Get metadata of colData and rowData
colGeometryMoransI | Univariate spatial stiatistics
colGeometryUnivariate | Univariate spatial stiatistics
ditto_colors | Colorblind friendly palette from dittoSeq
ElbowPlot | Plot the elbow plot or scree plot for PCA
getDivergeRange | Get beginning and end of palette to center a divergent palette
moranPlot | Use ggplot to plot the moran.plot results
plotAnnotGraph | Plot spatial graphs
plotCellBin2D | Plot cell density as 2D histogram
plotColDataBin2D | Plot colData and rowData with 2D histograms
plotColDataHistogram | Plot histograms for colData and rowData columns
plotColGraph | Plot spatial graphs
plotCorrelogram | Plot correlogram
plotDimLoadings | Plot top PC loadings of genes
plotLocalResult | Plot local results
plotMoranMC | Plot Moran/Geary monte carlo results
plotRowDataBin2D | Plot colData and rowData with 2D histograms
plotRowDataHistogram | Plot histograms for colData and rowData columns
plotSpatialFeature | Plot gene expression in space
rowFeatureData | Get metadata of colData and rowData
runMoransI | Univariate spatial stiatistics
runUnivariate | Univariate spatial stiatistics
spatialReducedDim | Plot dimension reduction components in space