# Visualising Set Enrichment Analysis Results

## Documentation for package ‘vissE’ version 1.8.0

- DESCRIPTION file.
- User guides, package vignettes and other documentation.
- Package NEWS.

## Help Pages

bhuvad_theme | Custom theme
characteriseGeneset | Functionally characterise a list of genes
computeMsigNetwork | Compute a network using computed gene set overlap
computeMsigOverlap | Compute gene set overlap
computeMsigWordFreq | Compute word frequencies for a single MSigDB collection
findMsigClusters | Identify gene-set clusters from a gene-set overlap network
getMsigBlacklist | Blacklist words for MSigDB gene set text mining
hgsc | The Hallmark collection from the MSigDB
plotGeneStats | Plot gene statistics for clusters of gene sets
plotMsigNetwork | Plot a gene set overlap network
plotMsigPPI | Plot PPI network for gene-set clusters identified using vissE
plotMsigWordcloud | Compute and plot word frequencies for multiple MSigDB collections