Package: Ularcirc
Type: Package
Title: Shiny app for canonical and back splicing analysis (i.e.
        circular and mRNA analysis)
Version: 1.24.0
Authors@R: person ("David", "Humphreys", email="d.humphreys@victorchang.edu.au", 
      role = c("aut","cre"))
Description: Ularcirc reads in STAR aligned splice junction files and provides
    visualisation and analysis tools for splicing analysis. Users can assess
    backsplice junctions and forward canonical junctions.
biocViews: DataRepresentation,Visualization, Genetics, Sequencing,
        Annotation, Coverage, AlternativeSplicing, DifferentialSplicing
License: file LICENSE
Encoding: UTF-8
Depends: R (>= 3.4.0)
Imports: AnnotationHub, AnnotationDbi, BiocGenerics, Biostrings,
        BSgenome, data.table (>= 1.9.4), DT, GenomicFeatures,
        GenomeInfoDb, GenomeInfoDbData, GenomicAlignments,
        GenomicRanges, ggplot2, ggrepel, gsubfn, mirbase.db, moments,
        Organism.dplyr, plotgardener, R.utils, S4Vectors, shiny,
        shinydashboard, shinyFiles, shinyjs, yaml
RoxygenNote: 7.1.2
Suggests: BSgenome.Hsapiens.UCSC.hg38, BiocStyle, httpuv, knitr,
        org.Hs.eg.db, rmarkdown, TxDb.Hsapiens.UCSC.hg38.knownGene
VignetteBuilder: knitr
git_url: https://git.bioconductor.org/packages/Ularcirc
git_branch: RELEASE_3_20
git_last_commit: 11e14cc
git_last_commit_date: 2024-10-29
Repository: Bioconductor 3.20
Date/Publication: 2024-10-29
NeedsCompilation: no
Packaged: 2024-10-30 03:19:57 UTC; biocbuild
Author: David Humphreys [aut, cre]
Maintainer: David Humphreys <d.humphreys@victorchang.edu.au>
Built: R 4.4.2; ; 2025-01-04 03:29:05 UTC; unix
