twoddpcr-package	twoddpcr-package
.classifyDfOnChannel	dot-classifyDfOnChannel
.classifyOnChannel	dot-classifyOnChannel
.classwiseMahalanobisRain	dot-classwiseMahalanobisRain
.cov	dot-cov
.ddpcrPlate	ddpcrPlate-class
.ddpcrWell	ddpcrWell-class
.dependentCols	dot-dependentCols
.essentialDependentCols	dot-essentialDependentCols
.extractWellNames	dot-extractWellNames
.getAllSummary	dot-getAllSummary
.getChannelCentres	dot-getChannelCentres
.getClassificationData	dot-getClassificationData
.getMutCopies	dot-getMutCopies
.getWellNames	dot-getWellNames
.getWtCopies	dot-getWtCopies
.isTwoDimDataFrame	dot-isTwoDimDataFrame
.isWideForm	dot-isWideForm
.mahDist	dot-mahDist
.matrixInverse	dot-matrixInverse
.numberOfWells	dot-numberOfWells
.renormaliseByChannel	dot-renormaliseByChannel
.renormaliseWell	dot-renormaliseWell
.roundIt	dot-roundIt
.slice	dot-slice
.totalCopies	dot-totalCopies
allPlot	facetPlot
amplitudes	amplitudes
amplitudes,ddpcrPlate-method	amplitudes
amplitudes,ddpcrWell-method	amplitudes
basicsSummary	basicsSummary
castSummary	castSummary
classCov	classCov
classMeans	classMeans
classStats	classStats
clusterCenters	clusterCentres
clusterCentres	clusterCentres
clusterCentres,ddpcrPlate-method	clusterCentres
clusterCentres,ddpcrWell-method	clusterCentres
combinedCenters	clusterCentres
combinedCentres	clusterCentres
combinedCentres,ddpcrPlate-method	clusterCentres
combinedPlateCenters	clusterCentres
combinedPlateCentres	clusterCentres
commonClassificationMethod	plateClassificationMethod
commonClassificationMethod,ddpcrPlate-method	plateClassificationMethod
copiesSummary	copiesSummary
ddpcr	ddpcr
ddpcrPlate	ddpcrPlate-class
ddpcrPlate,character-method	ddpcrPlate-class
ddpcrPlate,ddpcrPlate-method	ddpcrPlate-class
ddpcrPlate,list-method	ddpcrPlate-class
ddpcrPlate,missing-method	ddpcrPlate-class
ddpcrPlate-class	ddpcrPlate-class
ddpcrWell	ddpcrWell-class
ddpcrWell,character-method	ddpcrWell-class
ddpcrWell,data.frame-method	ddpcrWell-class
ddpcrWell,ddpcrWell-method	ddpcrWell-class
ddpcrWell,missing-method	ddpcrWell-class
ddpcrWell-class	ddpcrWell-class
densityPlot	heatPlot
drawBlank	drawBlank
dropletPlot	dropletPlot
dropletPlot,data.frame-method	dropletPlot
dropletPlot,ddpcrPlate-method	dropletPlot
dropletPlot,ddpcrWell-method	dropletPlot
elementType,SimpleList-method	elementType-SimpleList-method
exportTable	exportTable
exportTable,data.frame-method	exportTable
exportTable,ddpcrPlate-method	exportTable
exportTable,ddpcrWell-method	exportTable
exportZip	exportTable
exportZip,ddpcrPlate-method	exportTable
extractPlateName	extractPlateName
extractWellNames	extractWellNames
facetPlot	facetPlot
facetPlot,data.frame-method	facetPlot
facetPlot,ddpcrPlate-method	facetPlot
flatPlot	flatPlot
flatPlot,data.frame-method	flatPlot
flatPlot,ddpcrPlate-method	flatPlot
flatPlot,ddpcrWell-method	flatPlot
fullCopiesSummary	fullCopiesSummary
fullCountsSummary	fullCountsSummary
getCutOff	getCutOff
ggplot.multiwell	ggplot.well
ggplot.plate	ggplot.well
ggplot.plate,ddpcrPlate-method	ggplot.well
ggplot.well	ggplot.well
ggplot.well,ddpcrWell-method	ggplot.well
ggplot.wells	ggplot.well
gridClassify	gridClassify
gridClassify,data.frame-method	gridClassify
gridClassify,ddpcrPlate-method	gridClassify
gridClassify,ddpcrWell-method	gridClassify
heatPlot	heatPlot
heatPlot,data.frame-method	heatPlot
heatPlot,ddpcrPlate-method	heatPlot
heatPlot,ddpcrWell-method	heatPlot
isEmpty,ddpcrPlate-method	ddpcrWell-methods
isEmpty,ddpcrWell-method	ddpcrWell-methods
kmeansClassify	kmeansClassify
kmeansClassify,data.frame-method	kmeansClassify
kmeansClassify,ddpcrPlate-method	kmeansClassify
kmeansClassify,ddpcrWell-method	kmeansClassify
knnClassify	knnClassify
knnClassify,data.frame-method	knnClassify
knnClassify,ddpcrPlate-method	knnClassify
knnClassify,ddpcrWell-method	knnClassify
KRAScounts	KRAScounts
KRAScountsQS	KRAScounts
KRAScountsWellCol	KRAScounts
KRASdata	KRASdata
mahalanobisRain	mahalanobisRain
mahalanobisRain,data.frame-method	mahalanobisRain
mahalanobisRain,ddpcrPlate-method	mahalanobisRain
mahalanobisRain,ddpcrWell-method	mahalanobisRain
multivariateNormalRain	mahalanobisRain
multivariateRain	mahalanobisRain
mutantCopiesSummary	mutantCopiesSummary
mvNormalRain	mahalanobisRain
mvnRain	mahalanobisRain
numberDroplets	numDroplets
numberDrops	numDroplets
numberOfDroplets	numDroplets
numberOfDrops	numDroplets
numDroplets	numDroplets
numDroplets,ddpcrPlate-method	numDroplets
numDroplets,ddpcrWell-method	numDroplets
numDrops	numDroplets
numericInputRow	numericInputRow
numOfDroplets	numDroplets
parseClusterCounts	parseClusterCounts
plateCenters	clusterCentres
plateCentres	clusterCentres
plateClassification	plateClassification
plateClassification,ddpcrPlate-method	plateClassification
plateClassification<-	plateClassification
plateClassification<-,ddpcrPlate,character,factor-method	plateClassification
plateClassification<-,ddpcrPlate,character,list-method	plateClassification
plateClassificationMethod	plateClassificationMethod
plateClassificationMethod,ddpcrPlate-method	plateClassificationMethod
plateClassificationMethod<-	plateClassificationMethod
plateClassificationMethod<-,ddpcrPlate-method	plateClassificationMethod
plateClassificationName	plateClassificationMethod
plateClassMethod	plateClassificationMethod
plateClassName	plateClassificationMethod
plateSummary	plateSummary
plateSummary,ddpcrPlate-method	plateSummary
plateSummary,list-method	plateSummary
plotAll	facetPlot
positiveCounts	positiveCounts
readCSVDataFrame	readCSVDataFrame
relabelClasses	relabelClasses
removeDropletClasses	removeDropletClasses
removeDropletClasses,data.frame-method	removeDropletClasses
removeDropletClasses,ddpcrPlate-method	removeDropletClasses
removeDropletClasses,ddpcrWell-method	removeDropletClasses
renormalisePlate	renormalisePlate
sdRain	sdRain
sdRain,data.frame-method	sdRain
sdRain,ddpcrPlate-method	sdRain
sdRain,ddpcrWell-method	sdRain
setChannelNames	setChannelNames
setChannelNames,data.frame-method	setChannelNames
setChannelNames,list-method	setChannelNames
setDropletVol	setDropletVolume
setDropletVolume	setDropletVolume
setDropVol	setDropletVolume
setDropVolume	setDropletVolume
shinyVis	shinyVis
shinyVisApp	shinyVisApp
shinyVisServer	shinyVisServer
shinyVisUI	shinyVisUI
show,ddpcrPlate-method	ddpcrPlate-class
show,ddpcrWell-method	ddpcrWell-class
sortDataFrame	sortDataFrame
sortWells	sortWells
textInputRow	textInputRow
thresholdClassify	thresholdClassify
thresholdClassify,data.frame-method	thresholdClassify
thresholdClassify,ddpcrPlate-method	thresholdClassify
thresholdClassify,ddpcrWell-method	thresholdClassify
twoddpcr	twoddpcr-package
wellCenters	clusterCentres
wellCentres	clusterCentres
wellClassification	wellClassification
wellClassification,ddpcrWell-method	wellClassification
wellClassification<-	wellClassification
wellClassification<-,ddpcrWell-method	wellClassification
wellClassificationMethod	wellClassificationMethod
wellClassificationMethod,ddpcrWell-method	wellClassificationMethod
wellClassificationMethod<-	wellClassificationMethod
wellClassificationMethod<-,ddpcrWell-method	wellClassificationMethod
whiteTheme	whiteTheme
wildTypeCopiesSummary	wildTypeCopiesSummary
