# Promoter identification from large-scale TSS profiling data

## Documentation for package ‘TSRchitect’ version 1.12.0

- DESCRIPTION file.
- User guides, package vignettes and other documentation.
- Package NEWS.

## Help Pages

addAnnotationToTSR | *addAnnotationToTSR*
addAnnotationToTSR-method | *addAnnotationToTSR*
addTagCountsToTSR | *addTagCountsToTSR*
addTagCountsToTSR-method | *addTagCountsToTSR*
bedToTSS | *bedToTSS*
bedToTSS-method | *bedToTSS*
createSummarizedExperiment | *createSummarizedExperiment*
createSummarizedExperiment-method | *createSummarizedExperiment*
determineTSR | *determineTSR*
determineTSR-method | *determineTSR*
detTSR | detTSR
detTSR-method | detTSR
getBamDataFirstRead | *getBamDataFirstRead*
getBamDataFirstRead-method | *getBamDataFirstRead*
getBamDataLastRead | *getBamDataLastRead*
getBamDataLastRead-method | *getBamDataLastRead*
getFileNames | *getFileNames*
getFileNames-method | *getFileNames*
getTitle | *getTitle*
getTitle-method | *getTitle*
getTSRdata | *getTSRdata*
getTSRdata-method | *getTSRdata*
getTSScountData | *getTSScountData*
getTSScountData-method | *getTSScountData*
getTSStagData | *getTSStagData*
getTSStagData-method | *getTSStagData*
gsq2bed | *gsq2bed*
gsq2bed-method | *gsq2bed*
importAnnotationExternal | *importAnnotationExternal*
importAnnotationExternal-method | *importAnnotationExternal*
importAnnotationHub | *importAnnotationHub*
importAnnotationHub-method | *importAnnotationHub*
inputToTSS | *inputToTSS*
inputToTSS-method | *inputToTSS*
loadTSSobj | *loadTSSobj*
loadTSSobj-method | *loadTSSobj*
makeGRangesFromTSR | *makeGRangesFromTSR*
makeGRangesFromTSR-method | *makeGRangesFromTSR*
mergeSampleData | *mergeSampleData*
mergeSampleData-method | *mergeSampleData*
processTSS | *processTSS*
processTSS-method | *processTSS*
TSRchitectUsersGuide | *TSRchitectUsersGuide*
tssObject | *tssObject*
writeTSR | *writeTSR*
writeTSR-method | *writeTSR*
writeTSS | *writeTSS*
writeTSS-method | *writeTSS*