# This file created by conda-build 3.21.4
# meta.yaml template originally from:
# /opt/recipe, last modified Wed Jun  2 14:09:20 2021
# ------------------------------------------------

package:
  name: bioconductor-tscan
  version: 1.30.0
source:
  md5: 9ae81dcacbe8bb84d79f8d9ba646584a
  url:
    - https://bioarchive.galaxyproject.org/TSCAN_1.30.0.tar.gz
    - https://bioconductor.org/packages/3.13/bioc/src/contrib/TSCAN_1.30.0.tar.gz
    - https://depot.galaxyproject.org/software/bioconductor-tscan/bioconductor-tscan_1.30.0_src_all.tar.gz
build:
  noarch: generic
  number: '0'
  rpaths:
    - lib/
    - lib/R/lib/
  string: r41hdfd78af_0
requirements:
  host:
    - _libgcc_mutex 0.1 conda_forge
    - _openmp_mutex 4.5 1_gnu
    - _r-mutex 1.0.1 anacondar_1
    - binutils_impl_linux-64 2.35.1 h193b22a_2
    - binutils_linux-64 2.35 h67ddf6f_30
    - bioconductor-biobase 2.52.0 r41hd029910_0
    - bioconductor-biocgenerics 0.38.0 r41hdfd78af_0
    - bioconductor-delayedarray 0.18.0 r41hd029910_0
    - bioconductor-genomeinfodb 1.28.0 r41hdfd78af_0
    - bioconductor-genomeinfodbdata 1.2.6 r41hdfd78af_0
    - bioconductor-genomicranges 1.44.0 r41hd029910_0
    - bioconductor-iranges 2.26.0 r41hd029910_0
    - bioconductor-matrixgenerics 1.4.0 r41hdfd78af_0
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    - bioconductor-singlecellexperiment 1.14.1 r41hdfd78af_0
    - bioconductor-summarizedexperiment 1.22.0 r41hdfd78af_0
    - bioconductor-trajectoryutils 1.0.0 r41hdfd78af_0
    - bioconductor-xvector 0.32.0 r41hd029910_0
    - bioconductor-zlibbioc 1.38.0 r41hd029910_0
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    - font-ttf-source-code-pro 2.038 h77eed37_0
    - font-ttf-ubuntu 0.83 hab24e00_0
    - fontconfig 2.13.1 hba837de_1005
    - fonts-conda-ecosystem 1 0
    - fonts-conda-forge 1 0
    - freetype 2.10.4 h0708190_1
    - fribidi 1.0.10 h36c2ea0_0
    - gcc_impl_linux-64 9.3.0 h70c0ae5_19
    - gcc_linux-64 9.3.0 hf25ea35_30
    - gettext 0.19.8.1 h0b5b191_1005
    - gfortran_impl_linux-64 9.3.0 hc4a2995_19
    - gfortran_linux-64 9.3.0 hdc58fab_30
    - gmp 6.2.1 h58526e2_0
    - graphite2 1.3.13 h58526e2_1001
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    - libffi 3.3 h58526e2_2
    - libgcc-devel_linux-64 9.3.0 h7864c58_19
    - libgcc-ng 9.3.0 h2828fa1_19
    - libgfortran-ng 9.3.0 hff62375_19
    - libgfortran5 9.3.0 hff62375_19
    - libglib 2.68.2 h3e27bee_2
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    - liblapack 3.9.0 9_openblas
    - libnghttp2 1.43.0 h812cca2_0
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    - libstdcxx-ng 9.3.0 h6de172a_19
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    - pcre 8.44 he1b5a44_0
    - pcre2 10.36 h032f7d1_1
    - pixman 0.40.0 h36c2ea0_0
    - pthread-stubs 0.4 h36c2ea0_1001
    - r-assertthat 0.2.1 r41hc72bb7e_2
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    - r-base 4.1.0 h9e01966_1
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    - r-bitops 1.0_7 r41hcfec24a_0
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    - r-fastica 1.2_2 r41he454529_2
    - r-fastmap 1.1.0 r41h03ef668_0
    - r-fs 1.5.0 r41h03ef668_0
    - r-ggplot2 3.3.3 r41hc72bb7e_0
    - r-glue 1.4.2 r41hcfec24a_0
    - r-gplots 3.1.1 r41hc72bb7e_0
    - r-gtable 0.3.0 r41hc72bb7e_3
    - r-gtools 3.8.2 r41hcfec24a_1
    - r-htmltools 0.5.1.1 r41h03ef668_0
    - r-httpuv 1.6.1 r41h03ef668_0
    - r-igraph 1.2.6 r41he0372cf_1
    - r-isoband 0.2.4 r41h03ef668_0
    - r-jquerylib 0.1.4 r41hc72bb7e_0
    - r-jsonlite 1.7.2 r41hcfec24a_0
    - r-kernsmooth 2.23_20 r41h742201e_0
    - r-labeling 0.4.2 r41hc72bb7e_0
    - r-later 1.2.0 r41h03ef668_0
    - r-lattice 0.20_44 r41hcfec24a_0
    - r-lifecycle 1.0.0 r41hc72bb7e_0
    - r-magrittr 2.0.1 r41hcfec24a_1
    - r-mass 7.3_54 r41hcfec24a_0
    - r-matrix 1.3_4 r41he454529_0
    - r-matrixstats 0.59.0 r41hcfec24a_0
    - r-mclust 5.4.7 r41h52d45c5_0
    - r-mgcv 1.8_36 r41he454529_0
    - r-mime 0.10 r41hcfec24a_0
    - r-munsell 0.5.0 r41hc72bb7e_1003
    - r-nlme 3.1_152 r41h859d828_0
    - r-pillar 1.6.1 r41hc72bb7e_0
    - r-pkgconfig 2.0.3 r41hc72bb7e_1
    - r-pkgload 1.2.1 r41h03ef668_0
    - r-plyr 1.8.6 r41h03ef668_1
    - r-praise 1.0.0 r41hc72bb7e_1004
    - r-processx 3.5.2 r41hcfec24a_0
    - r-promises 1.2.0.1 r41h03ef668_0
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    - r-r6 2.5.0 r41hc72bb7e_0
    - r-rappdirs 0.3.3 r41hcfec24a_0
    - r-rcolorbrewer 1.1_2 r41h785f33e_1003
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    - r-rstudioapi 0.13 r41hc72bb7e_0
    - r-sass 0.4.0 r41h03ef668_0
    - r-scales 1.1.1 r41hc72bb7e_0
    - r-shiny 1.6.0 r41hc72bb7e_0
    - r-sourcetools 0.1.7 r41h9c3ff4c_1002
    - r-testthat 3.0.2 r41h03ef668_0
    - r-tibble 3.1.2 r41hcfec24a_0
    - r-utf8 1.2.1 r41hcfec24a_0
    - r-vctrs 0.3.8 r41hcfec24a_1
    - r-viridislite 0.4.0 r41hc72bb7e_0
    - r-waldo 0.2.5 r41hc72bb7e_0
    - r-withr 2.4.2 r41hc72bb7e_0
    - r-xtable 1.8_4 r41hc72bb7e_3
    - readline 8.1 h46c0cb4_0
    - sed 4.8 he412f7d_0
    - sysroot_linux-64 2.12 h77966d4_13
    - tk 8.6.10 h21135ba_1
    - tktable 2.10 hb7b940f_3
    - xorg-kbproto 1.0.7 h7f98852_1002
    - xorg-libice 1.0.10 h7f98852_0
    - xorg-libsm 1.2.3 hd9c2040_1000
    - xorg-libx11 1.7.1 h7f98852_0
    - xorg-libxau 1.0.9 h7f98852_0
    - xorg-libxdmcp 1.1.3 h7f98852_0
    - xorg-libxext 1.3.4 h7f98852_1
    - xorg-libxrender 0.9.10 h7f98852_1003
    - xorg-libxt 1.2.1 h7f98852_2
    - xorg-renderproto 0.11.1 h7f98852_1002
    - xorg-xextproto 7.3.0 h7f98852_1002
    - xorg-xproto 7.0.31 h7f98852_1007
    - xz 5.2.5 h516909a_1
    - zlib 1.2.11 h516909a_1010
    - zstd 1.5.0 ha95c52a_0
  run:
    - bioconductor-delayedarray >=0.18.0,<0.19.0
    - bioconductor-s4vectors >=0.30.0,<0.31.0
    - bioconductor-singlecellexperiment >=1.14.0,<1.15.0
    - bioconductor-summarizedexperiment >=1.22.0,<1.23.0
    - bioconductor-trajectoryutils >=1.0.0,<1.1.0
    - r-base >=4.1,<4.2.0a0
    - r-combinat
    - r-fastica
    - r-ggplot2
    - r-gplots
    - r-igraph
    - r-matrix
    - r-mclust
    - r-mgcv
    - r-plyr
    - r-shiny
test:
  commands:
    - $R -e "library('TSCAN')"
about:
  description: Provides methods to perform trajectory analysis based on a minimum
    spanning tree constructed from cluster centroids. Computes pseudotemporal cell
    orderings by mapping cells in each cluster (or new cells) to the closest edge
    in the tree. Uses linear modelling to identify differentially expressed genes
    along each path through the tree. Several plotting and interactive visualization
    functions are also implemented.
  home: https://bioconductor.org/packages/3.13/bioc/html/TSCAN.html
  license: GPL(>=2)
  license_file: /opt/conda/conda-bld/bioconductor-tscan_1622658476370/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_plac/lib/R/share/licenses/GPL-3
  summary: Tools for Single-Cell Analysis
extra:
  copy_test_source_files: true
  final: true
  identifiers:
    - biotools:tscan
    - doi:10.1093/nar/gkw430
