# Tools for Single-Cell Analysis

## Documentation for package ‘TSCAN’ version 1.28.0

- DESCRIPTION file.
- User guides, package vignettes and other documentation.
- Package NEWS.

## Help Pages

createClusterMST | Minimum spanning trees on cluster centroids
createClusterMST-method | Minimum spanning trees on cluster centroids
difftest | difftest
exprmclust | exprmclust
lpsdata | Sinlge-cell RNA-seq data for BMDC cells before and after LPS stimulation
mapCellsToEdges | Map cells to edges
mapCellsToEdges-method | Map cells to edges
orderCells | Compute pseudotimes from the MST
orderscore | orderscore
perCellEntropy | Compute the per-cell entropy
perCellEntropy-method | Compute the per-cell entropy
plotmclust | plotmclust
preprocess | preprocess
quickPseudotime | Quick MST-based pseudotime
quickPseudotime-method | Quick MST-based pseudotime
reportEdges | Report MST edge coordinates
reportEdges-method | Report MST edge coordinates
rowmean | Compute column means of a matrix based on a grouping variable
singlegeneplot | singlegeneplot
testPseudotime | Test for differences along pseudotime
testPseudotime-method | Test for differences along pseudotime
TSCAN | TSCAN: Tools for Single-Cell ANalysis
TSCANorder | TSCANorder
TSCANui | TSCANui