Package: traviz
Type: Package
Title: Trajectory functions for visualization and interpretation.
Version: 1.0.0
Authors@R: c(
	person("Hector", "Roux de Bezieux", role = c("aut", "ctb")),
	person("Kelly", "Street", role = c("aut", "ctb")),
	person("Koen", "Van den Berge", role = c("aut" , "cre"), email = "koen.vdberge@gmail.com"))
Description: 
  traviz provides a suite of functions to plot trajectory related objects from
	Bioconductor packages. It allows plotting trajectories in reduced dimension,
	as well as averge gene expression smoothers as a function of pseudotime.
	Asides from general utility functions, traviz also allows plotting trajectories
	estimated by Slingshot, as well as smoothers estimated by tradeSeq.
	Furthermore, it allows for visualization of Slingshot trajectories using ggplot2.
License: MIT + file LICENSE
Encoding: UTF-8
LazyData: false
Imports: ggplot2, viridis, mgcv, SingleCellExperiment, slingshot,
        princurve, Biobase, methods, RColorBrewer,
        SummarizedExperiment, grDevices, graphics, rgl
RoxygenNote: 7.1.1
Collate: 'AllGenerics.R' 'data.R' 'utilsTradeSeq.R' 'plotExpression.R'
        'plotGeneCount.R' 'plotSmoothers.R' 'plot_SlingshotDataSet.R'
Suggests: scater, dplyr, testthat (>= 3.0.0), covr, S4Vectors,
        rmarkdown, knitr
Config/testthat/edition: 3
Depends: R (>= 4.0)
biocViews: GeneExpression, RNASeq, Sequencing, Software, SingleCell,
        Transcriptomics, Visualization
VignetteBuilder: knitr
git_url: https://git.bioconductor.org/packages/traviz
git_branch: RELEASE_3_14
git_last_commit: 91d62fb
git_last_commit_date: 2021-10-26
Date/Publication: 2021-10-26
NeedsCompilation: no
Packaged: 2021-10-26 23:00:36 UTC; biocbuild
Author: Hector Roux de Bezieux [aut, ctb],
  Kelly Street [aut, ctb],
  Koen Van den Berge [aut, cre]
Maintainer: Koen Van den Berge <koen.vdberge@gmail.com>
Built: R 4.1.1; ; 2021-11-06 10:45:46 UTC; unix
