tRanslatome-package	tRanslatome-package
average.similarity.scores	average.similarity.scores
average.similarity.scores,GOsims-method	GOsims
CCComparison	tRanslatomeSampleData
CCEnrichment	tRanslatomeSampleData
computeDEGs	computeDEGs
computeDEGs,TranslatomeDataset-method	TranslatomeDataset
CVplot	CVplot
CVplot,DEGs-method	DEGs
DEGs-class	DEGs
DEGs.table	DEGs.table
DEGs.table,DEGs-method	DEGs
enriched.table	enriched.table
enriched.table,EnrichedSets-method	EnrichedSets
EnrichedSets-class	EnrichedSets
expressionMatrix	tRanslatomeSampleData
FC.threshold	FC.threshold
FC.threshold,DEGs-method	DEGs
getConditionA	getConditionA
getConditionA,TranslatomeDataset-method	TranslatomeDataset
getConditionB	getConditionB
getConditionB,TranslatomeDataset-method	TranslatomeDataset
getConditionC	getConditionC
getConditionC,TranslatomeDataset-method	TranslatomeDataset
getConditionD	getConditionD
getConditionD,TranslatomeDataset-method	TranslatomeDataset
getConditionLabels	getConditionLabels
getConditionLabels,TranslatomeDataset-method	TranslatomeDataset
getDataType	getDataType
getDataType,TranslatomeDataset-method	TranslatomeDataset
getDEGs	getDEGs
getDEGs,TranslatomeDataset-method	TranslatomeDataset
getDEGsMethod	getDEGsMethod
getDEGsMethod,DEGs-method	DEGs
getExprMatrix	getExprMatrix
getExprMatrix,TranslatomeDataset-method	TranslatomeDataset
getLevelLabels	getLevelLabels
getLevelLabels,TranslatomeDataset-method	TranslatomeDataset
GOComparison	GOComparison
GOComparison,GOsets-method	GOsets
GOEnrichment	GOEnrichment
GOEnrichment,DEGs-method	DEGs
GOsets-class	GOsets
GOsims-class	GOsims
Heatmap	Heatmap
Heatmap,EnrichedSets-method	EnrichedSets
Heatmap,GOsets-method	GOsets
Histogram	Histogram
Histogram,DEGs-method	DEGs
identity.matrix	identity.matrix
identity.matrix,GOsims-method	GOsims
IdentityPlot	IdentityPlot
IdentityPlot,GOsims-method	GOsims
label.condition	label.condition
label.condition,DEGs-method	DEGs
label.level.DEGs	label.level.DEGs
label.level.DEGs,DEGs-method	DEGs
label.level.enriched	label.level.enriched
label.level.enriched,EnrichedSets-method	EnrichedSets
limma.DEGs	tRanslatomeSampleData
MAplot	MAplot
MAplot,DEGs-method	DEGs
newTranslatomeDataset	newTranslatomeDataset
Radar	Radar
Radar,EnrichedSets-method	EnrichedSets
Radar,GOsets-method	GOsets
regulatory.elements.counts	tRanslatomeSampleData
regulatory.elements.regulated	tRanslatomeSampleData
RegulatoryEnrichment	RegulatoryEnrichment
RegulatoryEnrichment,DEGs-method	DEGs
Scatterplot	Scatterplot
Scatterplot,DEGs-method	DEGs
SDplot	SDplot
SDplot,DEGs-method	DEGs
show,DEGs-method	DEGs
show,EnrichedSets-method	EnrichedSets
show,GOsets-method	GOsets
show,TranslatomeDataset-method	TranslatomeDataset
significance.threshold	significance.threshold
significance.threshold,DEGs-method	DEGs
similarity.matrix	similarity.matrix
similarity.matrix,GOsims-method	GOsims
SimilarityPlot	SimilarityPlot
SimilarityPlot,GOsims-method	GOsims
tRanslatome	tRanslatome-package
translatome.analysis	tRanslatomeSampleData
tRanslatomeData	tRanslatomeSampleData
TranslatomeDataset-class	TranslatomeDataset
tRanslatomeSampleData	tRanslatomeSampleData
