Package: ToxicoGx
Type: Package
Title: Analysis of Large-Scale Toxico-Genomic Data
Version: 2.10.0
Date: 2023-03-08
Authors@R: c(
  person("Sisira","Nair", email = "sisira.nair@uhnresearch.ca",
    role = c("aut")),
  person("Esther","Yoo", email = "yk.yoo@mail.utoronto.ca",
    role = c("aut")),
  person("Christopher","Eeles", email = "christopher.eeles@uhnresearch.ca",
    role = c("aut")),
  person("Amy", "Tang", email = "amy.tang@queensu.ca",
    role = c("aut")),
  person("Nehme", "El-Hachem", email = "hachemn@gmail.com",
    role = c("aut")),
  person("Petr","Smirnov", email = "petr.smirnov@uhnresearch.ca",
    role = c("aut")),
  person("Jermiah","Joseph", email = "jermiah.joseph@uhn.ca",
    role = c("aut")),
  person("Benjamin","Haibe-Kains", email = "benjamin.haibe.kains@utoronto.ca",
    role = c("aut","cre"))
  )
Description: Contains a set of functions to perform large-scale analysis of
  toxicogenomic data, providing a standardized data structure to hold
  information relevant to annotation, visualization and statistical analysis of
  toxicogenomic data.
License: MIT + file LICENSE
Encoding: UTF-8
LazyData: true
Depends: R (>= 4.1), CoreGx
Imports: SummarizedExperiment, BiocGenerics, S4Vectors, Biobase,
        BiocParallel, ggplot2, tibble, dplyr, caTools, downloader,
        magrittr, methods, reshape2, tidyr, data.table, assertthat,
        scales, graphics, grDevices, parallel, stats, utils, limma,
        jsonlite
RoxygenNote: 7.2.3
Roxygen: list(markdown=TRUE, r6=FALSE)
VignetteBuilder: knitr
Suggests: rmarkdown, testthat, BiocStyle, knitr, tinytex, devtools,
        PharmacoGx, xtable, markdown
biocViews: GeneExpression, Pharmacogenetics, Pharmacogenomics, Software
Collate: 'LogLogisticRegression.R' 'SanityCheck.R' 'allGenerics.R'
        'ToxicoSet-class.R' 'ToxicoSet-accessors.R' 'class-signature.R'
        'columnsAsCharacter.R' 'computeAUC.R'
        'computeDrugSensitivity.R' 'computeIC50.R' 'computeICn.R'
        'dataset.R' 'downloadTSet.R' 'drugGeneResponseCurve.R'
        'drugPerturbationSig.R' 'drugTimeResponseCurve.R'
        'geneDrugPerturbation.R' 'geneDrugSensitivity.R' 'globals.R'
        'methods-computeLimmaDiffExpr.R' 'methods-subsetTo.R'
        'paramErrorChecker.R' 'paramMissingHandler.R'
        'paramMissingHandlerTests.R' 'rankGeneDrugPerturbation.R'
        'rankGeneDrugSensitivity.R' 'summarizeMolecularProfiles.R'
        'summarizeSensitivityProfiles.R' 'updateObject-methods.R'
        'utilities.R' 'zzz.R'
git_url: https://git.bioconductor.org/packages/ToxicoGx
git_branch: RELEASE_3_20
git_last_commit: 1bf04e4
git_last_commit_date: 2024-10-29
Repository: Bioconductor 3.20
Date/Publication: 2024-10-29
NeedsCompilation: no
Packaged: 2024-10-30 03:15:35 UTC; biocbuild
Author: Sisira Nair [aut],
  Esther Yoo [aut],
  Christopher Eeles [aut],
  Amy Tang [aut],
  Nehme El-Hachem [aut],
  Petr Smirnov [aut],
  Jermiah Joseph [aut],
  Benjamin Haibe-Kains [aut, cre]
Maintainer: Benjamin Haibe-Kains <benjamin.haibe.kains@utoronto.ca>
Built: R 4.4.2; ; 2024-12-21 09:05:48 UTC; unix
