Package: TOAST
Type: Package
Title: Tools for the analysis of heterogeneous tissues
Version: 1.4.0
Description: This package is devoted to analyzing high-throughput data (e.g. gene expression microarray, DNA methylation microarray, RNA-seq) from complex tissues. Current functionalities include 1. detect cell-type specific or cross-cell type differential signals  2. improve variable selection in reference-free deconvolution 3. partial reference-free deconvolution with prior knowledge.
Author: Ziyi Li and Hao Wu
Maintainer: Ziyi Li <ziyi.li@emory.edu>
License: GPL-2
Encoding: UTF-8
LazyData: false
Depends: R (>= 3.6), RefFreeEWAS, EpiDISH, limma, nnls
biocViews: DNAMethylation, GeneExpression, DifferentialExpression,
        DifferentialMethylation, Microarray, GeneTarget, Epigenetics,
        MethylationArray
BugReports: https://github.com/ziyili20/TOAST/issues
Imports: stats, methods, SummarizedExperiment, corpcor
Suggests: BiocStyle, knitr, rmarkdown, csSAM, gplots, matrixStats,
        Matrix
VignetteBuilder: knitr
git_url: https://git.bioconductor.org/packages/TOAST
git_branch: RELEASE_3_12
git_last_commit: 2158f75
git_last_commit_date: 2020-10-27
Date/Publication: 2020-10-27
NeedsCompilation: no
Packaged: 2020-10-28 04:00:26 UTC; biocbuild
Built: R 4.0.3; ; 2021-03-28 15:31:12 UTC; unix
