# Tools for Molecular Signatures

## Documentation for package ‘TMSig’ version 1.0.0

- DESCRIPTION file.
- User guides, package vignettes and other documentation.
- Package NEWS.

## Help Pages

cameraColorFun | Color Functions for enrichmap
cameraPR.matrix | Competitive Gene Set Test Accounting for Inter-gene Correlation
clusterSets | Similarity-Based Clustering of Sets
decomposeSets | Decompose Pairs of Overlapping Sets Into 3 Disjoint Parts
enrichmap | Set Enrichment Bubble Heatmap
enrichmapColorFunctions | Color Functions for enrichmap
extendRangeNum | Extend the Range of Values Out to the Nearest Digit
filterSets | Filter a Named List of Sets by Size
filterSets-method | Filter a Named List of Sets by Size
gseaColorFun | Color Functions for enrichmap
incidenceToList | Convert Incidence Matrix to a Named List of Sets
invertSets | Invert a List of Sets, Transposing Sets and Elements
invertSets-method | Invert a List of Sets, Transposing Sets and Elements
readGMT | Read GMT File to a Named List of Sets
similarity | Construct a Matrix of Pairwise Set Similarity Coefficients
sparseIncidence | Construct a Sparse Incidence Matrix
sparseIncidence-method | Construct a Sparse Incidence Matrix