# Time sensitive microRNA-mRNA integration, analysis and network generation tool

## Documentation for package ‘TimiRGeN’ version 1.4.0

- DESCRIPTION file.
- User guides, package vignettes and other documentation.
- Package NEWS.

## Help Pages

addIds | addIds
addPrefix | addPrefix
clusterCheck | clusterCheck
clusterList | clusterList
combineGenes | combineGenes
createClusters | createClusters
createClusters2 | createClusters2
cytoMake | cytoMake
dataMiningMatrix | dataMiningMatrix
diffExpressRes | diffExpressRes
dloadGmt | dloadGmt
dloadMirdb | dloadMirdb
dloadMirtarbase | dloadMirtarbase
dloadTargetscan | dloadTargetscan
eNames | eNames
enrichWiki | enrichWiki
e_list_mouse | e_list_mouse
genesList | genesList
getIdsMir | getIdsMir
getIdsMrna | getIdsMrna
gmtEnsembl | gmtEnsembl
hs_miR | Human microRNA data set
hs_mRNA | Human mRNA data set
hs_probes | hs_probes
linearRegr | linearRegr
long_data | Data from a longer time series (10 time points)
makeDynamic | makeDynamic
makeMapp | makeMapp
makeNet | makeNet
matrixFilter | matrixFilter
mirMrnaInt | mirMrnaInt
miRTarBase | miRTarBase dataset
mm_miR | Mouse microRNA data
mm_mRNA | Mouse microRNA data
multiReg | multiReg
quickBar | quickBar
quickCrossCorr | quickCrossCorr
quickDendro | quickDendro
quickDMap | quickDMap
quickFuzz | quickFuzz
quickHClust | quickHClust
quickMap | quickMap
quickNet | quickNet
quickPathwayTC | quickPathwayTC
quickReg | quickReg
quickTC | quickTC
quickTCPred | quickTCPred
reduceWiki | reduceWiki
returnCluster | returnCluster
savePlots | savePlots
significantVals | significantVals
startObject | startObject
turnPercent | turnPercent
UUO_data | UUO_data
wikiList | wikiList
wikiMatrix | wikiMatrix
wikiMrna | wikiMrna
w_list_mouse | Wikipathways lists for mouse produced by the wikiList function.