# Time sensitive microRNA-mRNA integration, analysis and network generation tool

## Documentation for package ‘TimiRGeN’ version 1.0.3

- DESCRIPTION file.
- User guides, package vignettes and other documentation.
- Package NEWS.

## Help Pages

addIds | addIds
addPrefix | addPrefix
clusterCheck | clusterCheck
combineGenes | combineGenes
createClusters | createClusters
cytoMake | cytoMake
dataMiningMatrix | dataMiningMatrix
diffExpressRes | diffExpressRes
dloadGmt | dloadGmt
dloadMirdb | dloadMirdb
dloadMirtarbase | dloadMirtarbase
dloadTargetscan | dloadTargetscan
eNames | eNames
enrichWiki | enrichWiki
e_list_mouse | e_list_mouse
genesList | genesList
getIdsMir | getIdsMir
getIdsMrna | getIdsMrna
gmtEnsembl | gmtEnsembl
hs_miR | Human microRNA data set
hs_mRNA | Human mRNA data set
makeDynamic | makeDynamic
makeMapp | makeMapp
makeNet | makeNet
matrixFilter | matrixFilter
mirMrnaInt | mirMrnaInt
miRTarBase | miRTarBase dataset
mm_miR | Mouse microRNA data
mm_mRNA | Mouse microRNA data
quickBar | quickBar
quickDot | quickDot
quickFuzz | quickFuzz
quickNet | quickNet
reduceWiki | reduceWiki
returnCluster | returnCluster
savePlots | savePlots
significantVals | significantVals
startObject | startObject
turnPercent | turnPercent
wikiList | wikiList
wikiMatrix | wikiMatrix
wikiMrna | wikiMrna
w_list_mouse | Wikipathways lists for mouse produced by the wikiList function.