Package: TimeSeriesExperiment
Type: Package
Title: Analysis for short time-series data
Version: 1.8.0
Date: 2018-10-29
Author: Lan Huong Nguyen
Maintainer: Lan Huong Nguyen <nlhuong90@gmail.com>
Description: Visualization and analysis toolbox for short time course data
  which includes dimensionality reduction, clustering, two-sample differential
  expression testing and gene ranking techniques. The package also provides
  methods for retrieving enriched pathways.
License: LGPL (>= 3)
Depends: R (>= 3.5.0), S4Vectors (>= 0.19.23), SummarizedExperiment (>=
        1.11.6)
VignetteBuilder: knitr
Imports: dynamicTreeCut, dplyr, edgeR, DESeq2, ggplot2 (>= 3.0.0),
        graphics, Hmisc, limma, methods, magrittr, proxy, stats,
        tibble, tidyr, vegan, viridis, utils
Suggests: Biobase, BiocFileCache (>= 1.5.8), circlize, ComplexHeatmap,
        GO.db, grDevices, grid, knitr, org.Mm.eg.db, org.Hs.eg.db,
        MASS, RColorBrewer, rmarkdown, UpSetR,
Collate: TimeSeriesExperiment-class.R TimeSeriesExperiment-methods.R
        utils.R pca.R clustering.R differential_expression.R
        pathway_over_representation.R plots.R data.R
Encoding: UTF-8
RoxygenNote: 6.1.1
biocViews: TimeCourse, Sequencing, RNASeq, Microbiome, GeneExpression,
        ImmunoOncology, Transcription, Normalization,
        DifferentialExpression, PrincipalComponent, Clustering,
        Visualization, Pathways
BugReports: https://github.com/nlhuong/TimeSeriesExperiment/issues
URL: https://github.com/nlhuong/TimeSeriesExperiment
git_url: https://git.bioconductor.org/packages/TimeSeriesExperiment
git_branch: RELEASE_3_12
git_last_commit: 99d7630
git_last_commit_date: 2020-10-27
Date/Publication: 2020-10-27
NeedsCompilation: no
Packaged: 2020-10-28 03:59:17 UTC; biocbuild
Built: R 4.0.3; ; 2021-04-01 04:01:39 UTC; unix
