# Brings SingleCellExperiment to the Tidyverse

## Documentation for package ‘tidySingleCellExperiment’ version 1.16.0

- DESCRIPTION file.
- User guides, package vignettes and other documentation.

## Help Pages

add_count | Count the observations in each group
add_count.SingleCellExperiment | Count the observations in each group
aggregate_cells | Aggregate cells
aggregate_cells-method | Aggregate cells
arrange | Order rows using column values
arrange.SingleCellExperiment | Order rows using column values
as_tibble | Coerce lists, matrices, and more to data frames
as_tibble.SingleCellExperiment | Coerce lists, matrices, and more to data frames
bind_cols | Efficiently bind multiple data frames by row and column
bind_cols.SingleCellExperiment | Efficiently bind multiple data frames by row and column
bind_rows | Efficiently bind multiple data frames by row and column
bind_rows.SingleCellExperiment | Efficiently bind multiple data frames by row and column
cell_type_df | Cell types of 80 PBMC single cells
count | Count the observations in each group
count.SingleCellExperiment | Count the observations in each group
distinct | Keep distinct/unique rows
distinct.SingleCellExperiment | Keep distinct/unique rows
extract | Extract a character column into multiple columns using regular expression groups
extract.SingleCellExperiment | Extract a character column into multiple columns using regular expression groups
filter | Keep rows that match a condition
filter.SingleCellExperiment | Keep rows that match a condition
formatting | Printing tibbles
full_join | Mutating joins
full_join.SingleCellExperiment | Mutating joins
ggplot | Create a new 'ggplot' from a 'tidySingleCellExperiment'
ggplot.SingleCellExperiment | Create a new 'ggplot' from a 'tidySingleCellExperiment'
glimpse | Get a glimpse of your data
glimpse.tidySingleCellExperiment | Get a glimpse of your data
group_by | Group by one or more variables
group_by.SingleCellExperiment | Group by one or more variables
group_split | Split data frame by groups
group_split.SingleCellExperiment | Split data frame by groups
inner_join | Mutating joins
inner_join.SingleCellExperiment | Mutating joins
join_features | join_features
join_features-method | join_features
join_transcripts | (DEPRECATED) Extract and join information for transcripts.
left_join | Mutating joins
left_join.SingleCellExperiment | Mutating joins
mutate | Create, modify, and delete columns
mutate.SingleCellExperiment | Create, modify, and delete columns
nest | Nest rows into a list-column of data frames
nest.SingleCellExperiment | Nest rows into a list-column of data frames
pbmc_small | pbmc_small
pbmc_small_nested_interactions | Intercellular ligand-receptor interactions for 38 ligands from a single cell RNA-seq cluster.
pivot_longer | Pivot data from wide to long
pivot_longer.SingleCellExperiment | Pivot data from wide to long
plot_ly | Initiate a plotly visualization
plot_ly.SingleCellExperiment | Initiate a plotly visualization
print | Printing tibbles
print.SingleCellExperiment | Printing tibbles
pull | Extract a single column
pull.SingleCellExperiment | Extract a single column
rename | Rename columns
rename.SingleCellExperiment | Rename columns
return_arguments_of | returns variables from an expression
right_join | Mutating joins
right_join.SingleCellExperiment | Mutating joins
rowwise | Group input by rows
rowwise.SingleCellExperiment | Group input by rows
sample_frac | Sample n rows from a table
sample_frac.SingleCellExperiment | Sample n rows from a table
sample_n | Sample n rows from a table
sample_n.SingleCellExperiment | Sample n rows from a table
select | Keep or drop columns using their names and types
select.SingleCellExperiment | Keep or drop columns using their names and types
separate | Separate a character column into multiple columns with a regular expression or numeric locations
separate.SingleCellExperiment | Separate a character column into multiple columns with a regular expression or numeric locations
slice | Subset rows using their positions
slice.SingleCellExperiment | Subset rows using their positions
slice_head | Subset rows using their positions
slice_head.SingleCellExperiment | Subset rows using their positions
slice_max | Subset rows using their positions
slice_max.SingleCellExperiment | Subset rows using their positions
slice_min | Subset rows using their positions
slice_min.SingleCellExperiment | Subset rows using their positions
slice_sample | Subset rows using their positions
slice_sample.SingleCellExperiment | Subset rows using their positions
slice_tail | Subset rows using their positions
slice_tail.SingleCellExperiment | Subset rows using their positions
summarise | Summarise each group down to one row
summarise.SingleCellExperiment | Summarise each group down to one row
summarize | Summarise each group down to one row
summarize.SingleCellExperiment | Summarise each group down to one row
tbl_format_header | Format the header of a tibble
tbl_format_header.tidySingleCellExperiment | Format the header of a tibble
tidy | tidy for 'SingleCellExperiment'
tidy.SingleCellExperiment | tidy for 'SingleCellExperiment'
unite | Unite multiple columns into one by pasting strings together
unite.SingleCellExperiment | Unite multiple columns into one by pasting strings together
unnest | Unnest a list-column of data frames into rows and columns
unnest.tidySingleCellExperiment_nested | Unnest a list-column of data frames into rows and columns
unnest_single_cell_experiment | Unnest a list-column of data frames into rows and columns