%>%	pipe
.describe_transcript_SE	describe_transcript-methods
adjust_abundance	adjust_abundance-methods
adjust_abundance,RangedSummarizedExperiment-method	adjust_abundance-methods
adjust_abundance,spec_tbl_df-method	adjust_abundance-methods
adjust_abundance,SummarizedExperiment-method	adjust_abundance-methods
adjust_abundance,tbl_df-method	adjust_abundance-methods
adjust_abundance,tidybulk-method	adjust_abundance-methods
aggregate_duplicates	aggregate_duplicates-methods
aggregate_duplicates,RangedSummarizedExperiment-method	aggregate_duplicates-methods
aggregate_duplicates,spec_tbl_df-method	aggregate_duplicates-methods
aggregate_duplicates,SummarizedExperiment-method	aggregate_duplicates-methods
aggregate_duplicates,tbl_df-method	aggregate_duplicates-methods
aggregate_duplicates,tidybulk-method	aggregate_duplicates-methods
arrange	arrange-methods
as_matrix	as_matrix
as_SummarizedExperiment	as_SummarizedExperiment-methods
as_SummarizedExperiment,spec_tbl_df-method	as_SummarizedExperiment-methods
as_SummarizedExperiment,tbl_df-method	as_SummarizedExperiment-methods
as_SummarizedExperiment,tidybulk-method	as_SummarizedExperiment-methods
as_tibble	reexports
bind_cols	dplyr-methods
bind_rows	bind_rows
breast_tcga_mini_SE	breast_tcga_mini_SE
check_if_counts_is_na	check_if_counts_is_na
check_if_duplicated_genes	check_if_duplicated_genes
check_if_wrong_input	check_if_wrong_input
cluster_elements	cluster_elements-methods
cluster_elements,RangedSummarizedExperiment-method	cluster_elements-methods
cluster_elements,spec_tbl_df-method	cluster_elements-methods
cluster_elements,SummarizedExperiment-method	cluster_elements-methods
cluster_elements,tbl_df-method	cluster_elements-methods
cluster_elements,tidybulk-method	cluster_elements-methods
counts_ensembl	counts_ensembl
deconvolve_cellularity	deconvolve_cellularity-methods
deconvolve_cellularity,RangedSummarizedExperiment-method	deconvolve_cellularity-methods
deconvolve_cellularity,spec_tbl_df-method	deconvolve_cellularity-methods
deconvolve_cellularity,SummarizedExperiment-method	deconvolve_cellularity-methods
deconvolve_cellularity,tbl_df-method	deconvolve_cellularity-methods
deconvolve_cellularity,tidybulk-method	deconvolve_cellularity-methods
describe_transcript	describe_transcript-methods
describe_transcript,RangedSummarizedExperiment-method	describe_transcript-methods
describe_transcript,spec_tbl_df-method	describe_transcript-methods
describe_transcript,SummarizedExperiment-method	describe_transcript-methods
describe_transcript,tbl_df-method	describe_transcript-methods
describe_transcript,tidybulk-method	describe_transcript-methods
distinct	distinct-methods
do	reexports
ensembl_symbol_mapping	ensembl_symbol_mapping
ensembl_to_symbol	ensembl_to_symbol-methods
ensembl_to_symbol,spec_tbl_df-method	ensembl_to_symbol-methods
ensembl_to_symbol,tbl_df-method	ensembl_to_symbol-methods
ensembl_to_symbol,tidybulk-method	ensembl_to_symbol-methods
fill_missing_abundance	fill_missing_abundance-methods
fill_missing_abundance,spec_tbl_df-method	fill_missing_abundance-methods
fill_missing_abundance,tbl_df-method	fill_missing_abundance-methods
fill_missing_abundance,tidybulk-method	fill_missing_abundance-methods
filter	filter-methods
flybaseIDs	flybaseIDs
full_join	join-methods
get_bibliography	get_bibliography-methods
get_bibliography,RangedSummarizedExperiment-method	get_bibliography-methods
get_bibliography,spec_tbl_df-method	get_bibliography-methods
get_bibliography,SummarizedExperiment-method	get_bibliography-methods
get_bibliography,tbl-method	get_bibliography-methods
get_bibliography,tbl_df-method	get_bibliography-methods
get_bibliography,tidybulk-method	get_bibliography-methods
get_reduced_dimensions_UMAP_bulk	get_reduced_dimensions_UMAP_bulk
get_reduced_dimensions_UMAP_bulk_SE	get_reduced_dimensions_UMAP_bulk_SE
group_by	group_by-methods
identify_abundant	identify_abundant-methods
identify_abundant,RangedSummarizedExperiment-method	identify_abundant-methods
identify_abundant,spec_tbl_df-method	identify_abundant-methods
identify_abundant,SummarizedExperiment-method	identify_abundant-methods
identify_abundant,tbl_df-method	identify_abundant-methods
identify_abundant,tidybulk-method	identify_abundant-methods
impute_missing_abundance	impute_missing_abundance-methods
impute_missing_abundance,RangedSummarizedExperiment-method	impute_missing_abundance-methods
impute_missing_abundance,spec_tbl_df-method	impute_missing_abundance-methods
impute_missing_abundance,SummarizedExperiment-method	impute_missing_abundance-methods
impute_missing_abundance,tbl_df-method	impute_missing_abundance-methods
impute_missing_abundance,tidybulk-method	impute_missing_abundance-methods
inner_join	join-methods
keep_abundant	keep_abundant-methods
keep_abundant,RangedSummarizedExperiment-method	keep_abundant-methods
keep_abundant,spec_tbl_df-method	keep_abundant-methods
keep_abundant,SummarizedExperiment-method	keep_abundant-methods
keep_abundant,tbl_df-method	keep_abundant-methods
keep_abundant,tidybulk-method	keep_abundant-methods
keep_variable	keep_variable-methods
keep_variable,RangedSummarizedExperiment-method	keep_variable-methods
keep_variable,spec_tbl_df-method	keep_variable-methods
keep_variable,SummarizedExperiment-method	keep_variable-methods
keep_variable,tbl_df-method	keep_variable-methods
keep_variable,tidybulk-method	keep_variable-methods
left_join	dplyr-methods
log10_reverse_trans	log10_reverse_trans
logit_trans	logit_trans
mutate	mutate-methods
nest	nest-methods
pivot_sample	pivot_sample-methods
pivot_sample,RangedSummarizedExperiment-method	pivot_sample-methods
pivot_sample,spec_tbl_df-method	pivot_sample-methods
pivot_sample,SummarizedExperiment-method	pivot_sample-methods
pivot_sample,tbl_df-method	pivot_sample-methods
pivot_sample,tidybulk-method	pivot_sample-methods
pivot_transcript	pivot_transcript-methods
pivot_transcript,RangedSummarizedExperiment-method	pivot_transcript-methods
pivot_transcript,spec_tbl_df-method	pivot_transcript-methods
pivot_transcript,SummarizedExperiment-method	pivot_transcript-methods
pivot_transcript,tbl_df-method	pivot_transcript-methods
pivot_transcript,tidybulk-method	pivot_transcript-methods
quantile_normalise_abundance	quantile_normalise_abundance-methods
quantile_normalise_abundance,RangedSummarizedExperiment-method	quantile_normalise_abundance-methods
quantile_normalise_abundance,spec_tbl_df-method	quantile_normalise_abundance-methods
quantile_normalise_abundance,SummarizedExperiment-method	quantile_normalise_abundance-methods
quantile_normalise_abundance,tbl_df-method	quantile_normalise_abundance-methods
quantile_normalise_abundance,tidybulk-method	quantile_normalise_abundance-methods
reduce_dimensions	reduce_dimensions-methods
reduce_dimensions,RangedSummarizedExperiment-method	reduce_dimensions-methods
reduce_dimensions,spec_tbl_df-method	reduce_dimensions-methods
reduce_dimensions,SummarizedExperiment-method	reduce_dimensions-methods
reduce_dimensions,tbl_df-method	reduce_dimensions-methods
reduce_dimensions,tidybulk-method	reduce_dimensions-methods
reexports	reexports
remove_redundancy	remove_redundancy-methods
remove_redundancy,RangedSummarizedExperiment-method	remove_redundancy-methods
remove_redundancy,spec_tbl_df-method	remove_redundancy-methods
remove_redundancy,SummarizedExperiment-method	remove_redundancy-methods
remove_redundancy,tbl_df-method	remove_redundancy-methods
remove_redundancy,tidybulk-method	remove_redundancy-methods
rename	rename-methods
resolve_complete_confounders_of_non_interest	resolve_complete_confounders_of_non_interest-methods
resolve_complete_confounders_of_non_interest,RangedSummarizedExperiment-method	resolve_complete_confounders_of_non_interest-methods
resolve_complete_confounders_of_non_interest,SummarizedExperiment-method	resolve_complete_confounders_of_non_interest-methods
right_join	join-methods
rotate_dimensions	rotate_dimensions-methods
rotate_dimensions,RangedSummarizedExperiment-method	rotate_dimensions-methods
rotate_dimensions,spec_tbl_df-method	rotate_dimensions-methods
rotate_dimensions,SummarizedExperiment-method	rotate_dimensions-methods
rotate_dimensions,tbl_df-method	rotate_dimensions-methods
rotate_dimensions,tidybulk-method	rotate_dimensions-methods
rowwise	rowwise-methods
scale_abundance	scale_abundance-methods
scale_abundance,RangedSummarizedExperiment-method	scale_abundance-methods
scale_abundance,spec_tbl_df-method	scale_abundance-methods
scale_abundance,SummarizedExperiment-method	scale_abundance-methods
scale_abundance,tbl_df-method	scale_abundance-methods
scale_abundance,tidybulk-method	scale_abundance-methods
se	se
select	reexports
se_mini	se_mini
summarise	summarise-methods
symbol_to_entrez	symbol_to_entrez
test_differential_abundance	test_differential_abundance-methods
test_differential_abundance,RangedSummarizedExperiment-method	test_differential_abundance-methods
test_differential_abundance,spec_tbl_df-method	test_differential_abundance-methods
test_differential_abundance,SummarizedExperiment-method	test_differential_abundance-methods
test_differential_abundance,tbl_df-method	test_differential_abundance-methods
test_differential_abundance,tidybulk-method	test_differential_abundance-methods
test_differential_cellularity	test_differential_cellularity-methods
test_differential_cellularity,RangedSummarizedExperiment-method	test_differential_cellularity-methods
test_differential_cellularity,spec_tbl_df-method	test_differential_cellularity-methods
test_differential_cellularity,SummarizedExperiment-method	test_differential_cellularity-methods
test_differential_cellularity,tbl_df-method	test_differential_cellularity-methods
test_differential_cellularity,tidybulk-method	test_differential_cellularity-methods
test_gene_enrichment	test_gene_enrichment-methods
test_gene_enrichment,RangedSummarizedExperiment-method	test_gene_enrichment-methods
test_gene_enrichment,spec_tbl_df-method	test_gene_enrichment-methods
test_gene_enrichment,SummarizedExperiment-method	test_gene_enrichment-methods
test_gene_enrichment,tbl_df-method	test_gene_enrichment-methods
test_gene_enrichment,tidybulk-method	test_gene_enrichment-methods
test_gene_overrepresentation	test_gene_overrepresentation-methods
test_gene_overrepresentation,RangedSummarizedExperiment-method	test_gene_overrepresentation-methods
test_gene_overrepresentation,spec_tbl_df-method	test_gene_overrepresentation-methods
test_gene_overrepresentation,SummarizedExperiment-method	test_gene_overrepresentation-methods
test_gene_overrepresentation,tbl_df-method	test_gene_overrepresentation-methods
test_gene_overrepresentation,tidybulk-method	test_gene_overrepresentation-methods
test_gene_rank	test_gene_rank-methods
test_gene_rank,RangedSummarizedExperiment-method	test_gene_rank-methods
test_gene_rank,spec_tbl_df-method	test_gene_rank-methods
test_gene_rank,SummarizedExperiment-method	test_gene_rank-methods
test_gene_rank,tbl_df-method	test_gene_rank-methods
test_gene_rank,tidybulk-method	test_gene_rank-methods
test_stratification_cellularity	test_stratification_cellularity-methods
test_stratification_cellularity,RangedSummarizedExperiment-method	test_stratification_cellularity-methods
test_stratification_cellularity,spec_tbl_df-method	test_stratification_cellularity-methods
test_stratification_cellularity,SummarizedExperiment-method	test_stratification_cellularity-methods
test_stratification_cellularity,tbl_df-method	test_stratification_cellularity-methods
test_stratification_cellularity,tidybulk-method	test_stratification_cellularity-methods
tibble	reexports
tidybulk	tidybulk-methods
tidybulk,RangedSummarizedExperiment-method	tidybulk-methods
tidybulk,spec_tbl_df-method	tidybulk-methods
tidybulk,SummarizedExperiment-method	tidybulk-methods
tidybulk,tbl_df-method	tidybulk-methods
tidybulk_SAM_BAM	tidybulk_SAM_BAM-methods
tidybulk_SAM_BAM,character,character-method	tidybulk_SAM_BAM-methods
tximeta_summarizeToGene_object	tximeta_summarizeToGene_object
unnest	nest-methods
vignette_manuscript_signature_boxplot	vignette_manuscript_signature_boxplot
vignette_manuscript_signature_tsne	vignette_manuscript_signature_tsne
vignette_manuscript_signature_tsne2	vignette_manuscript_signature_tsne2
X_cibersort	X_cibersort
