Type: Package
Package: tidybulk
Title: Brings transcriptomics to the tidyverse
Version: 1.12.0
Authors@R: c(person("Stefano", "Mangiola", email = "mangiolastefano@gmail.com",
                  role = c("aut", "cre")),
            person("Maria", "Doyle", email = "Maria.Doyle@petermac.org",
            role = c("ctb"))
                  )
Description: This is a collection of utility functions that allow
    to perform exploration of and calculations to RNA sequencing data, in
    a modular, pipe-friendly and tidy fashion.
License: GPL-3
Depends: R (>= 4.1.0)
Imports: tibble, readr, dplyr, magrittr, tidyr, stringi, stringr,
        rlang, purrr, tidyselect, preprocessCore, stats, parallel,
        utils, lifecycle, scales, SummarizedExperiment, GenomicRanges,
        methods, S4Vectors, crayon
Suggests: BiocStyle, testthat, vctrs, AnnotationDbi, BiocManager,
        Rsubread, e1071, edgeR, limma, org.Hs.eg.db, org.Mm.eg.db, sva,
        GGally, knitr, qpdf, covr, Seurat, KernSmooth, Rtsne, ggplot2,
        widyr, clusterProfiler, msigdbr, DESeq2, broom, survival, boot,
        betareg, tidyHeatmap, pasilla, ggrepel, devtools, functional,
        survminer, tidySummarizedExperiment, markdown, uwot,
        matrixStats, igraph, EGSEA
VignetteBuilder: knitr
RdMacros: lifecycle
Biarch: true
biocViews: AssayDomain, Infrastructure, RNASeq, DifferentialExpression,
        GeneExpression, Normalization, Clustering, QualityControl,
        Sequencing, Transcription, Transcriptomics
Encoding: UTF-8
LazyData: true
RoxygenNote: 7.2.3
LazyDataCompression: xz
URL: https://github.com/stemangiola/tidybulk
BugReports: https://github.com/stemangiola/tidybulk/issues
git_url: https://git.bioconductor.org/packages/tidybulk
git_branch: RELEASE_3_17
git_last_commit: 0a0b397
git_last_commit_date: 2023-04-25
Date/Publication: 2023-04-25
NeedsCompilation: no
Packaged: 2023-04-25 23:06:42 UTC; biocbuild
Author: Stefano Mangiola [aut, cre],
  Maria Doyle [ctb]
Maintainer: Stefano Mangiola <mangiolastefano@gmail.com>
Built: R 4.3.0; ; 2023-07-11 16:20:00 UTC; unix
