ARNT.metadata	ARNT.metadata
ARNT.peaks.bed	ARNT.peaks.bed
CM_list	CM_list
contingency_matrix	contingency_matrix
DnaseHS_db	DnaseHS_db
Entrez.gene.IDs	Entrez.gene.IDs
GeneID2entrez	GeneID2entrez
Genes.Upreg	Genes.Upreg
getCMstats	getCMstats
get_chip_index	get_chip_index
get_LFC_bar	get_LFC_bar
gr.list	gr.list
GR2tfbs_db	GR2tfbs_db
GSEA.result	GSEA.result
GSEA_EnrichmentScore	GSEA_EnrichmentScore
GSEA_run	GSEA_run
GSEA_Shuffling	GSEA_Shuffling
highlight_TF	highlight_TF
hypoxia	hypoxia
hypoxia_DESeq	hypoxia_DESeq
log2.FC	log2.FC
makeTFBSmatrix	makeTFBSmatrix
Mat01	Mat01
MetaData	MetaData
plot_CM	plot_CM
plot_ES	plot_ES
plot_RES	plot_RES
preprocessInputData	preprocessInputData
Select_genes	Select_genes
set_user_data	set_user_data
stat_mat	stat_mat
tfbs.database	tfbs.database
txt2GR	txt2GR
