Package: TFEA.ChIP
Type: Package
Title: Analyze Transcription Factor Enrichment
Version: 1.12.0
Author: Laura Puente Santamaría, Luis del Peso
Maintainer: Laura Puente Santamaría <lpsantamaria@iib.uam.es>
Description: Package to analize transcription factor enrichment in a gene set using data from ChIP-Seq experiments.
Depends: R (>= 3.3)
License: Artistic-2.0
Encoding: UTF-8
LazyData: false
RoxygenNote: 6.1.1
Imports: GenomicRanges, IRanges, biomaRt, GenomicFeatures, grDevices,
        dplyr, stats, utils, R.utils, methods, org.Hs.eg.db
Suggests: knitr, rmarkdown, S4Vectors, plotly, scales, tidyr, ggplot2,
        GSEABase, DESeq2, BiocGenerics, ggrepel, rcompanion,
        TxDb.Hsapiens.UCSC.hg19.knownGene
VignetteBuilder: knitr
biocViews: Transcription, GeneRegulation, GeneSetEnrichment,
        Transcriptomics, Sequencing, ChIPSeq, RNASeq, ImmunoOncology
NeedsCompilation: no
Packaged: 2021-05-19 22:59:54 UTC; biocbuild
git_url: https://git.bioconductor.org/packages/TFEA.ChIP
git_branch: RELEASE_3_13
git_last_commit: ef83d9d
git_last_commit_date: 2021-05-19
Date/Publication: 2021-05-19
Built: R 4.1.0; ; 2021-06-03 13:58:36 UTC; unix
