# This file created by conda-build 3.21.4
# meta.yaml template originally from:
# /opt/recipe, last modified Wed Jun  2 14:16:47 2021
# ------------------------------------------------

package:
  name: bioconductor-tcgabiolinks
  version: 2.20.0
source:
  md5: 7188e985e16825ae18f487644c0b41a7
  url:
    - https://bioarchive.galaxyproject.org/TCGAbiolinks_2.20.0.tar.gz
    - https://bioconductor.org/packages/3.13/bioc/src/contrib/TCGAbiolinks_2.20.0.tar.gz
    - https://depot.galaxyproject.org/software/bioconductor-tcgabiolinks/bioconductor-tcgabiolinks_2.20.0_src_all.tar.gz
build:
  noarch: generic
  number: '0'
  rpaths:
    - lib/
    - lib/R/lib/
  string: r41hdfd78af_0
requirements:
  host:
    - _libgcc_mutex 0.1 conda_forge
    - _openmp_mutex 4.5 1_gnu
    - _r-mutex 1.0.1 anacondar_1
    - binutils_impl_linux-64 2.35.1 h193b22a_2
    - binutils_linux-64 2.35 h67ddf6f_30
    - bioconductor-annotationdbi 1.54.0 r41hdfd78af_0
    - bioconductor-biobase 2.52.0 r41hd029910_0
    - bioconductor-biocfilecache 2.0.0 r41hdfd78af_0
    - bioconductor-biocgenerics 0.38.0 r41hdfd78af_0
    - bioconductor-biomart 2.48.0 r41hdfd78af_0
    - bioconductor-biostrings 2.60.0 r41hd029910_0
    - bioconductor-delayedarray 0.18.0 r41hd029910_0
    - bioconductor-genomeinfodb 1.28.0 r41hdfd78af_0
    - bioconductor-genomeinfodbdata 1.2.6 r41hdfd78af_0
    - bioconductor-genomicranges 1.44.0 r41hd029910_0
    - bioconductor-iranges 2.26.0 r41hd029910_0
    - bioconductor-keggrest 1.32.0 r41hdfd78af_0
    - bioconductor-matrixgenerics 1.4.0 r41hdfd78af_0
    - bioconductor-s4vectors 0.30.0 r41hd029910_0
    - bioconductor-summarizedexperiment 1.22.0 r41hdfd78af_0
    - bioconductor-tcgabiolinksgui.data 1.12.0 r41hdfd78af_0
    - bioconductor-xvector 0.32.0 r41hd029910_0
    - bioconductor-zlibbioc 1.38.0 r41hd029910_0
    - bwidget 1.9.14 ha770c72_0
    - bzip2 1.0.8 h7f98852_4
    - c-ares 1.17.1 h7f98852_1
    - ca-certificates 2021.5.30 ha878542_0
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    - font-ttf-dejavu-sans-mono 2.37 hab24e00_0
    - font-ttf-inconsolata 3.000 h77eed37_0
    - font-ttf-source-code-pro 2.038 h77eed37_0
    - font-ttf-ubuntu 0.83 hab24e00_0
    - fontconfig 2.13.1 hba837de_1005
    - fonts-conda-ecosystem 1 0
    - fonts-conda-forge 1 0
    - freetype 2.10.4 h0708190_1
    - fribidi 1.0.10 h36c2ea0_0
    - gcc_impl_linux-64 9.3.0 h70c0ae5_19
    - gcc_linux-64 9.3.0 hf25ea35_30
    - gettext 0.19.8.1 h0b5b191_1005
    - gfortran_impl_linux-64 9.3.0 hc4a2995_19
    - gfortran_linux-64 9.3.0 hdc58fab_30
    - graphite2 1.3.13 h58526e2_1001
    - gsl 2.6 he838d99_2
    - gxx_impl_linux-64 9.3.0 hd87eabc_19
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    - icu 68.1 h58526e2_0
    - jbig 2.1 h7f98852_2003
    - jpeg 9d h36c2ea0_0
    - kernel-headers_linux-64 2.6.32 h77966d4_13
    - krb5 1.19.1 hcc1bbae_0
    - ld_impl_linux-64 2.35.1 hea4e1c9_2
    - lerc 2.2.1 h9c3ff4c_0
    - libblas 3.9.0 9_openblas
    - libcblas 3.9.0 9_openblas
    - libcurl 7.77.0 h2574ce0_0
    - libdeflate 1.7 h7f98852_5
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    - libev 4.33 h516909a_1
    - libffi 3.3 h58526e2_2
    - libgcc-devel_linux-64 9.3.0 h7864c58_19
    - libgcc-ng 9.3.0 h2828fa1_19
    - libgfortran-ng 9.3.0 hff62375_19
    - libgfortran5 9.3.0 hff62375_19
    - libglib 2.68.2 h3e27bee_2
    - libgomp 9.3.0 h2828fa1_19
    - libiconv 1.16 h516909a_0
    - liblapack 3.9.0 9_openblas
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    - libopenblas 0.3.15 pthreads_h8fe5266_1
    - libpng 1.6.37 h21135ba_2
    - libssh2 1.9.0 ha56f1ee_6
    - libstdcxx-devel_linux-64 9.3.0 hb016644_19
    - libstdcxx-ng 9.3.0 h6de172a_19
    - libtiff 4.3.0 hf544144_1
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    - lz4-c 1.9.3 h9c3ff4c_0
    - make 4.3 hd18ef5c_1
    - ncurses 6.2 h58526e2_4
    - openssl 1.1.1k h7f98852_0
    - pango 1.48.5 hb8ff022_0
    - pcre 8.44 he1b5a44_0
    - pcre2 10.36 h032f7d1_1
    - pixman 0.40.0 h36c2ea0_0
    - pthread-stubs 0.4 h36c2ea0_1001
    - r-askpass 1.1 r41hcfec24a_2
    - r-assertthat 0.2.1 r41hc72bb7e_2
    - r-backports 1.2.1 r41hcfec24a_0
    - r-base 4.1.0 h9e01966_1
    - r-bit 4.0.4 r41hcfec24a_0
    - r-bit64 4.0.5 r41hcfec24a_0
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    - r-data.table 1.14.0 r41hcfec24a_0
    - r-dbi 1.1.1 r41hc72bb7e_0
    - r-dbplyr 2.1.1 r41hc72bb7e_0
    - r-desc 1.3.0 r41hc72bb7e_0
    - r-diffobj 0.3.4 r41hcfec24a_0
    - r-digest 0.6.27 r41h03ef668_0
    - r-downloader 0.4 r41hc72bb7e_1003
    - r-dplyr 1.0.6 r41h03ef668_1
    - r-ellipsis 0.3.2 r41hcfec24a_0
    - r-evaluate 0.14 r41hc72bb7e_2
    - r-fansi 0.4.2 r41hcfec24a_0
    - r-farver 2.1.0 r41h03ef668_0
    - r-fastmap 1.1.0 r41h03ef668_0
    - r-filelock 1.0.2 r41hcfec24a_1002
    - r-generics 0.1.0 r41hc72bb7e_0
    - r-ggplot2 3.3.3 r41hc72bb7e_0
    - r-glue 1.4.2 r41hcfec24a_0
    - r-gtable 0.3.0 r41hc72bb7e_3
    - r-highr 0.9 r41hc72bb7e_0
    - r-hms 1.1.0 r41hc72bb7e_0
    - r-httr 1.4.2 r41hc72bb7e_0
    - r-isoband 0.2.4 r41h03ef668_0
    - r-jsonlite 1.7.2 r41hcfec24a_0
    - r-knitr 1.33 r41hc72bb7e_0
    - r-labeling 0.4.2 r41hc72bb7e_0
    - r-lattice 0.20_44 r41hcfec24a_0
    - r-lifecycle 1.0.0 r41hc72bb7e_0
    - r-magrittr 2.0.1 r41hcfec24a_1
    - r-markdown 1.1 r41hcfec24a_1
    - r-mass 7.3_54 r41hcfec24a_0
    - r-matrix 1.3_4 r41he454529_0
    - r-matrixstats 0.59.0 r41hcfec24a_0
    - r-memoise 2.0.0 r41hc72bb7e_0
    - r-mgcv 1.8_36 r41he454529_0
    - r-mime 0.10 r41hcfec24a_0
    - r-munsell 0.5.0 r41hc72bb7e_1003
    - r-nlme 3.1_152 r41h859d828_0
    - r-openssl 1.4.4 r41he36bf35_0
    - r-pillar 1.6.1 r41hc72bb7e_0
    - r-pkgconfig 2.0.3 r41hc72bb7e_1
    - r-pkgload 1.2.1 r41h03ef668_0
    - r-plogr 0.2.0 r41hc72bb7e_1003
    - r-plyr 1.8.6 r41h03ef668_1
    - r-png 0.1_7 r41hcfec24a_1004
    - r-praise 1.0.0 r41hc72bb7e_1004
    - r-prettyunits 1.1.1 r41hc72bb7e_1
    - r-processx 3.5.2 r41hcfec24a_0
    - r-progress 1.2.2 r41hc72bb7e_2
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    - r-r.methodss3 1.8.1 r41hc72bb7e_0
    - r-r.oo 1.24.0 r41hc72bb7e_0
    - r-r.utils 2.10.1 r41hc72bb7e_0
    - r-r6 2.5.0 r41hc72bb7e_0
    - r-rappdirs 0.3.3 r41hcfec24a_0
    - r-rcolorbrewer 1.1_2 r41h785f33e_1003
    - r-rcpp 1.0.6 r41h03ef668_0
    - r-rcurl 1.98_1.3 r41hcfec24a_0
    - r-readr 1.4.0 r41h03ef668_0
    - r-rematch2 2.1.2 r41hc72bb7e_1
    - r-rlang 0.4.11 r41hcfec24a_0
    - r-rprojroot 2.0.2 r41hc72bb7e_0
    - r-rsqlite 2.2.5 r41h03ef668_0
    - r-rstudioapi 0.13 r41hc72bb7e_0
    - r-rvest 1.0.0 r41hc72bb7e_0
    - r-scales 1.1.1 r41hc72bb7e_0
    - r-selectr 0.4_2 r41hc72bb7e_1
    - r-stringi 1.6.2 r41hcabe038_0
    - r-stringr 1.4.0 r41hc72bb7e_2
    - r-sys 3.4 r41hcfec24a_0
    - r-testthat 3.0.2 r41h03ef668_0
    - r-tibble 3.1.2 r41hcfec24a_0
    - r-tidyr 1.1.3 r41h03ef668_0
    - r-tidyselect 1.1.1 r41hc72bb7e_0
    - r-utf8 1.2.1 r41hcfec24a_0
    - r-vctrs 0.3.8 r41hcfec24a_1
    - r-viridislite 0.4.0 r41hc72bb7e_0
    - r-waldo 0.2.5 r41hc72bb7e_0
    - r-withr 2.4.2 r41hc72bb7e_0
    - r-xfun 0.23 r41h03ef668_0
    - r-xml 3.99_0.6 r41hcfec24a_0
    - r-xml2 1.3.2 r41h03ef668_1
    - r-yaml 2.2.1 r41hcfec24a_1
    - readline 8.1 h46c0cb4_0
    - sed 4.8 he412f7d_0
    - sysroot_linux-64 2.12 h77966d4_13
    - tk 8.6.10 h21135ba_1
    - tktable 2.10 hb7b940f_3
    - xorg-kbproto 1.0.7 h7f98852_1002
    - xorg-libice 1.0.10 h7f98852_0
    - xorg-libsm 1.2.3 hd9c2040_1000
    - xorg-libx11 1.7.1 h7f98852_0
    - xorg-libxau 1.0.9 h7f98852_0
    - xorg-libxdmcp 1.1.3 h7f98852_0
    - xorg-libxext 1.3.4 h7f98852_1
    - xorg-libxrender 0.9.10 h7f98852_1003
    - xorg-libxt 1.2.1 h7f98852_2
    - xorg-renderproto 0.11.1 h7f98852_1002
    - xorg-xextproto 7.3.0 h7f98852_1002
    - xorg-xproto 7.0.31 h7f98852_1007
    - xz 5.2.5 h516909a_1
    - zlib 1.2.11 h516909a_1010
    - zstd 1.5.0 ha95c52a_0
  run:
    - bioconductor-biomart >=2.48.0,<2.49.0
    - bioconductor-genomicranges >=1.44.0,<1.45.0
    - bioconductor-iranges >=2.26.0,<2.27.0
    - bioconductor-s4vectors >=0.30.0,<0.31.0
    - bioconductor-summarizedexperiment >=1.22.0,<1.23.0
    - bioconductor-tcgabiolinksgui.data >=1.12.0,<1.13.0
    - r-base >=4.1,<4.2.0a0
    - r-data.table
    - r-downloader >=0.4
    - r-dplyr
    - r-ggplot2
    - r-httr >=1.2.1
    - r-jsonlite >=1.0.0
    - r-knitr
    - r-plyr
    - r-purrr
    - r-r.utils
    - r-readr
    - r-rvest >=0.3.0
    - r-stringr >=1.0.0
    - r-tibble
    - r-tidyr
    - r-xml >=3.98.0
    - r-xml2
test:
  commands:
    - $R -e "library('TCGAbiolinks')"
about:
  description: 'The aim of TCGAbiolinks is : i) facilitate the GDC open-access data
    retrieval, ii) prepare the data using the appropriate pre-processing strategies,
    iii) provide the means to carry out different standard analyses and iv) to easily
    reproduce earlier research results. In more detail, the package provides multiple
    methods for analysis (e.g., differential expression analysis, identifying differentially
    methylated regions) and methods for visualization (e.g., survival plots, volcano
    plots, starburst plots) in order to easily develop complete analysis pipelines.'
  home: https://bioconductor.org/packages/3.13/bioc/html/TCGAbiolinks.html
  license: GPL (>= 3)
  license_file: /opt/conda/conda-bld/bioconductor-tcgabiolinks_1622660143076/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeho/lib/R/share/licenses/GPL-3
  summary: 'TCGAbiolinks: An R/Bioconductor package for integrative analysis with
    GDC data'
extra:
  copy_test_source_files: true
  final: true
  identifiers:
    - biotools:tcgabiolinks
    - doi:10.1093/nar/gkv1507
