Package: TBSignatureProfiler
Title: Profile RNA-Seq Data Using TB Pathway Signatures
Version: 1.6.0
Authors@R: 
    c(person(given = "David", family = "Jenkins", role = c("aut"), email = "dfj@bu.edu"),
      person(given = "Aubrey", family = "Odom", role = c("aut", "cre"), email = "aodom@bu.edu"),
      person(given = "Xutao", family = "Wang", role = "aut", email = "xutaow@bu.edu"),
      person(given = "Yue", family = "Zhao", role = c("aut"), email = "yuezh@bu.edu"),
      person(given = "Christian", family = "Love", role = c("aut"), email = "clove@bu.edu"),
      person(given = "W. Evan", family = "Johnson", role = c("aut"), email = "wej@bu.edu"))
Description: Gene signatures of TB progression, TB disease, and other TB disease
    states have been validated and published previously. This package aggregates
    known signatures and provides computational tools to enlist their usage on
    other datasets. The TBSignatureProfiler makes it easy to profile RNA-Seq
    data using these signatures and includes common signature profiling tools
    including ASSIGN, GSVA, and ssGSEA.
License: MIT + file LICENSE
Encoding: UTF-8
biocViews: GeneExpression, DifferentialExpression
RoxygenNote: 7.1.1
LazyData: TRUE
Depends: R (>= 4.1)
Imports: ASSIGN (>= 1.23.1), GSVA, singscore, methods, ComplexHeatmap,
        RColorBrewer, ggplot2, S4Vectors, reshape2, ROCit, DESeq2, DT,
        edgeR, gdata, SummarizedExperiment, magrittr, stats, rlang,
        BiocParallel, BiocGenerics
Suggests: testthat, spelling, lintr, covr, knitr, rmarkdown, BiocStyle,
        shiny, circlize, caret, dplyr, plyr, impute, sva, glmnet,
        randomForest, MASS, class, e1071, pROC, HGNChelper
URL: https://github.com/compbiomed/TBSignatureProfiler
        https://compbiomed.github.io/TBSignatureProfiler-docs/
BugReports: https://github.com/compbiomed/TBSignatureProfiler/issues
Language: en-US
VignetteBuilder: knitr
git_url: https://git.bioconductor.org/packages/TBSignatureProfiler
git_branch: RELEASE_3_14
git_last_commit: fe6bf5e
git_last_commit_date: 2021-10-26
Date/Publication: 2021-10-26
NeedsCompilation: no
Packaged: 2021-10-26 22:57:26 UTC; biocbuild
Author: David Jenkins [aut],
  Aubrey Odom [aut, cre],
  Xutao Wang [aut],
  Yue Zhao [aut],
  Christian Love [aut],
  W. Evan Johnson [aut]
Maintainer: Aubrey Odom <aodom@bu.edu>
Built: R 4.1.1; ; 2021-11-07 21:36:16 UTC; unix
