Package: TBSignatureProfiler
Title: Profile RA-Seq Data Using TB Pathway Signatures
Version: 1.0.0
Authors@R: 
    c(person(given = "David", family = "Jenkins", role = c("aut", "cre"), email = "dfj@bu.edu"),
      person(given = "Yue", family = "Zhao", role = c("aut"), email = "yuezh@bu.edu"),
      person(given = c("W. Evan"), family = "Johnson", role = c("aut"), email = "wej@bu.edu"),
      person(given = c("Aubrey"), family = "Odom", role = c("aut"), email = "aodom@bu.edu"),
      person(given = c("Christian"), family = "Love", role = c("aut"), email = "clove@bu.edu"))
Description: Signatures of TB progression, TB disease, and other TB disease
    states have been created. This package makes it easy to profile RNA-Seq data
    using these signatures and common signature profiling tools including
    ASSIGN, GSVA, and ssGSEA.
License: MIT + file LICENSE
Encoding: UTF-8
biocViews: GeneExpression, DifferentialExpression
LazyData: true
RoxygenNote: 7.1.0
Depends: R (>= 4.0.0)
Imports: ASSIGN (>= 1.23.1), GSVA, SummarizedExperiment, S4Vectors,
        methods, BiocParallel, ComplexHeatmap, RColorBrewer, ggplot2,
        reshape2, circlize, glmnet, ROCit, bioDist, readr, boot,
        DESeq2, caret, ggfortify, e1071, DT, edgeR, singscore, gdata,
        shiny
Suggests: testthat, spelling, lintr, covr, knitr, rmarkdown, BiocStyle
URL: https://github.com/compbiomed/TBSignatureProfiler
BugReports: https://github.com/compbiomed/TBSignatureProfiler/issues
Language: en-US
VignetteBuilder: knitr
git_url: https://git.bioconductor.org/packages/TBSignatureProfiler
git_branch: RELEASE_3_11
git_last_commit: 67171e1
git_last_commit_date: 2020-04-27
Date/Publication: 2020-04-27
NeedsCompilation: no
Packaged: 2020-04-28 04:50:54 UTC; biocbuild
Author: David Jenkins [aut, cre],
  Yue Zhao [aut],
  W. Evan Johnson [aut],
  Aubrey Odom [aut],
  Christian Love [aut]
Maintainer: David Jenkins <dfj@bu.edu>
Built: R 4.0.0; ; 2020-05-14 19:30:38 UTC; unix
