Package: TarSeqQC
Type: Package
Version: 1.27.0
Date: 2021-11-21
Title: TARgeted SEQuencing Experiment Quality Control
Author: Gabriela A. Merino, Cristobal Fresno, Yanina Murua, Andrea S. Llera
    and Elmer A. Fernandez
Maintainer: Gabriela Merino <merino.gabriela33@gmail.com>
Description: The package allows the representation of targeted
    experiment in R. This is based on current packages and
    incorporates functions to do a quality control over this kind
    of experiments and a fast exploration of the sequenced regions.
    An xlsx file is generated as output.
URL: http://www.bdmg.com.ar
License: GPL (>=2)
Depends: R (>= 3.5.1), methods, GenomicRanges, Rsamtools (>= 1.9.2),
        ggplot2, plyr, openxlsx
Imports: grDevices, stats, utils, S4Vectors, IRanges, BiocGenerics,
        reshape2, GenomeInfoDb, BiocParallel, Biostrings, cowplot,
        graphics, GenomicAlignments, Hmisc
Suggests: BiocManager, RUnit
Collate: 'TarSeqQC-package.R' 'TargetExperiment.R'
        'TargetExperimentList.R' 'checkBedFasta.R'
        'TargetExperiment-ampliPanel.R'
        'TargetExperiment-ampliPanel2.R' 'TargetExperiment-getters.R'
        'TargetExperiment-setters.R' 'TargetExperiment-show.R'
        'TargetExperiment-print.R' 'TargetExperiment-pileupCounts.R'
        'TargetExperiment-buildFeaturePanel.R'
        'TargetExperiment-summarizePanel.R'
        'TargetExperiment-initialize.R'
        'TargetExperiment-constructor.R'
        'TargetExperiment-statistics.R' 'TargetExperiment-plot.R'
        'TargetExperiment-ggplotColours.R'
        'TargetExperiment-addStatSummSheet.R'
        'TargetExperiment-plotRegion.R'
        'TargetExperiment-plotFeature.R'
        'TargetExperiment-plotGeneAttrPerFeat.R'
        'TargetExperiment-plotNtdPercentage.R'
        'TargetExperiment-readFrequencies.R'
        'TargetExperiment-myCounts.R'
        'TargetExperiment-plotInOutFeatures.R'
        'TargetExperiment-biasExploration.R'
        'TargetExperiment-buildReport.R'
        'TargetExperiment-plotAttrPerform.R'
        'TargetExperiment-plotAttrExpl.R'
        'TargetExperiment-plotFeatPerform.R'
        'TargetExperiment-plotMetaDataExpl.R'
        'TargetExperimentList-TEList.R'
        'TargetExperimentList-initialize.R'
        'TargetExperimentList-constructor.R'
        'TargetExperimentList-getters.R'
        'TargetExperimentList-setters.R' 'TargetExperimentList-show.R'
        'TargetExperimentList-print.R'
        'TargetExperimentList-statistics.R'
        'TargetExperimentList-plot.R'
        'TargetExperimentList-plotGlobalAttrExpl.R'
        'TargetExperimentList-plotAttrExpl.R'
        'TargetExperimentList-plotPoolPerformance.R'
biocViews: Software, Sequencing, TargetedResequencing, QualityControl,
        Visualization, Coverage, Alignment, DataImport
NeedsCompilation: no
Packaged: 2022-08-24 22:01:43 UTC; biocbuild
RoxygenNote: 5.0.1
git_url: https://git.bioconductor.org/packages/TarSeqQC
git_branch: master
git_last_commit: d404b5b
git_last_commit_date: 2022-04-26
Date/Publication: 2022-08-24
Built: R 4.2.2; ; 2022-11-07 23:09:55 UTC; unix
