Package: synlet
Type: Package
Title: Hits Selection for Synthetic Lethal RNAi Screen Data
Version: 1.22.0
Date: 2015-07-31
Author: Chunxuan Shao <c.shao@dkfz.de>
Maintainer: Chunxuan Shao <c.shao@dkfz.de>
Description: Select hits from synthetic lethal RNAi screen data. For
        example, there are two identical celllines except one gene is
        knocked-down in one cellline. The interest is to find genes
        that lead to stronger lethal effect when they are knocked-down
        further by siRNA. Quality control and various visualisation
        tools are implemented. Four different algorithms could be used
        to pick up the interesting hits. This package is designed based
        on 384 wells plates, but may apply to other platforms with
        proper configuration.
License: GPL-3
LazyData: TRUE
biocViews: ImmunoOncology, CellBasedAssays, QualityControl,
        Preprocessing, Visualization, FeatureExtraction
Depends: R (>= 3.2.0), ggplot2
Imports: doBy, dplyr, grid, magrittr, RColorBrewer, RankProd, reshape2
Suggests: knitr, testthat
VignetteBuilder: knitr
NeedsCompilation: no
git_url: https://git.bioconductor.org/packages/synlet
git_branch: RELEASE_3_13
git_last_commit: c97772b
git_last_commit_date: 2021-05-19
Date/Publication: 2021-05-19
Packaged: 2021-05-19 22:57:53 UTC; biocbuild
Built: R 4.1.0; ; 2021-05-31 13:12:25 UTC; unix
