# Tools for Working With Synteny Objects

## Documentation for package ‘SynExtend’ version 1.4.1

- DESCRIPTION file.
- User guides, package vignettes and other documentation.

## Help Pages

DisjointSet | Return single linkage clusters from 'PairSummaries' objects.
ExtractBy | Extract and organize 'XStringSet's of sequences represented in a 'PairSummaries' object.
FindSets | Find all single linkage clusters in an undirected pairs list.
Generic | Model for predicting PID based on k-mer statistics
gffToDataFrame | Generate a DataFrame of gene calls from a gff3 file
LinkedPairs-class | Tables of where syntenic hits link pairs of genes
NucleotideOverlap | Tabulating Pairs of Genomic Sequences
PairSummaries | Summarize connected pairs in a LinkedPairs object
print.LinkedPairs | Tables of where syntenic hits link pairs of genes
[.LinkedPairs | Tables of where syntenic hits link pairs of genes