# Tools for Working With Synteny Objects

## Documentation for package ‘SynExtend’ version 1.0.0

- DESCRIPTION file.
- User guides, package vignettes and other documentation.

## Help Pages

ExactSelect | Model for identifying erroneously linked pairs
gffToDataFrame | Generate a DataFrame of gene calls from a gff3 file
GlobalSelect | Model for identifying erroneously linked pairs
LinkedPairs-class | Tables of where syntenic hits link pairs of genes
LocalSelect | Model for identifying erroneously linked pairs
NucleotideOverlap | Tabulating Pairs of Genomic Sequences
PairSummaries | Summarize connected pairs in a LinkedPairs object
print.LinkedPairs | Tables of where syntenic hits link pairs of genes
[.LinkedPairs | Tables of where syntenic hits link pairs of genes