STRINGdb-class          Class '"STRINGdb"'
\S4method{add_diff_exp_color}{STRINGdb}
                        add_diff_exp_color
\S4method{add_proteins_description}{STRINGdb}
                        add_proteins_description
\S4method{benchmark_ppi_pathway_view}{STRINGdb}
                        benchmark_ppi_pathway_view
\S4method{benchmark_ppi}{STRINGdb}
                        benchmark_ppi
\S4method{get_aliases}{STRINGdb}
                        get_aliases
\S4method{get_annotations_desc}{STRINGdb}
                        get_annotations_desc
\S4method{get_annotations}{STRINGdb}
                        get_annotations
\S4method{get_bioc_graph}{STRINGdb}
                        get_bioc_graph
\S4method{get_clusters}{STRINGdb}
                        get_clusters
\S4method{get_enrichment}{STRINGdb}
                        get_enrichment
\S4method{get_graph}{STRINGdb}
                        get_graph
\S4method{get_homologs_besthits}{STRINGdb}
                        get_homologs_besthits
\S4method{get_homologs}{STRINGdb}
                        get_homologs
\S4method{get_interactions}{STRINGdb}
                        get_interactions
\S4method{get_link}{STRINGdb}
                        get_link
\S4method{get_neighbors}{STRINGdb}
                        get_neighbors
\S4method{get_png}{STRINGdb}
                        get_png
\S4method{get_ppi_enrichment_full}{STRINGdb}
                        get_ppi_enrichment_full
\S4method{get_ppi_enrichment}{STRINGdb}
                        get_ppi_enrichment
\S4method{get_proteins}{STRINGdb}
                        get_proteins
\S4method{get_pubmed_interaction}{STRINGdb}
                        get_pubmed_interaction
\S4method{get_pubmed}{STRINGdb}
                        get_pubmed
\S4method{get_subnetwork}{STRINGdb}
                        get_subnetwork
\S4method{get_summary}{STRINGdb}
                        get_summary
\S4method{get_term_proteins}{STRINGdb}
                        get_term_proteins
\S4method{load_all}{STRINGdb}
                        load_all
\S4method{load}{STRINGdb}
                        load
\S4method{map}{STRINGdb}
                        map
\S4method{mp}{STRINGdb}
                        mp
\S4method{plot_network}{STRINGdb}
                        plot_network
\S4method{plot_ppi_enrichment}{STRINGdb}
                        plot_ppi_enrichment
\S4method{post_payload}{STRINGdb}
                        post_payload
\S4method{remove_homologous_interactions}{STRINGdb}
                        remove_homologous_interactions
\S4method{set_background}{STRINGdb}
                        set_background
coeffOfvar              coeffOfvar
delColDf                delColDf
diff_exp_example1       example of microarray data (data processed from
                        GEO GSE9008)
downloadAbsentFile      downloadAbsentFile
downloadAbsentFileSTRING
                        downloadAbsentFileSTRING
get_STRING_species      get_STRING_species
interactions_example    example of a protein-protein interactions
                        sorted data frame
multi_map_df            multi_map_df
plot_ppi_enrichment_graph
                        plot_ppi_enrichment_graph
ppi_enrichment          ppi_enrichment
ppi_enrichment_full     ppi_enrichment_full
ppie.compLambda         ppie.compLambda
ppie.compLambdaL1L2     ppie.compLambdaL1L2
ppie.compPij            ppie.compPij
ppie.getNumEdgesBetween
                        ppie.getNumEdgesBetween
renameColDf             renameColDf
