Package: strandCheckR
Type: Package
Title: Calculate strandness information of a bam file
Version: 1.6.0
Authors@R: c(
    person("Thu-Hien", "To", , "tothuhien@gmail.com", c("aut", "cre")),
    person("Steve", "Pederson", , "stephen.pederson@adelaide.edu.au", c("aut"))
    )
Maintainer: Thu-Hien To <tothuhien@gmail.com>
Description: This package aims to quantify and remove putative double strand DNA from a strand-specific RNA sample. There are also options and methods to plot the positive/negative proportions of all sliding windows, which allow users to have an idea of how much the sample was contaminated and the appropriate threshold to be used for filtering.
License: GPL (>= 2)
LazyData: TRUE
Imports: dplyr, magrittr, GenomeInfoDb, GenomicAlignments,
        GenomicRanges, IRanges, Rsamtools, S4Vectors, grid,
        BiocGenerics, ggplot2, reshape2, stats, gridExtra,
        TxDb.Hsapiens.UCSC.hg38.knownGene, methods, stringr
biocViews: RNASeq, Alignment, QualityControl, Coverage, ImmunoOncology
RoxygenNote: 6.0.1
VignetteBuilder: knitr
Suggests: BiocStyle, knitr, testthat
git_url: https://git.bioconductor.org/packages/strandCheckR
git_branch: RELEASE_3_11
git_last_commit: bfc166e
git_last_commit_date: 2020-04-27
Date/Publication: 2020-04-27
NeedsCompilation: no
Packaged: 2020-04-28 03:41:20 UTC; biocbuild
Author: Thu-Hien To [aut, cre],
  Steve Pederson [aut]
Built: R 4.0.0; ; 2020-05-11 15:04:11 UTC; unix
