Package: ssPATHS
Type: Package
Title: ssPATHS: Single Sample PATHway Score
Version: 1.20.0
Author: Natalie R. Davidson
Maintainer: Natalie R. Davidson <natalie.davidson@inf.ethz.ch>
Description: This package generates pathway scores from expression data for
    single samples after training on a reference cohort. The score is generated
    by taking the expression of a gene set (pathway) from a reference cohort
    and performing linear discriminant analysis to distinguish samples in the
    cohort that have the pathway augmented and not. The separating hyperplane is
    then used to score new samples.
License: MIT + file LICENSE
Encoding: UTF-8
LazyData: true
Imports: ROCR, dml, MESS
Suggests: ggplot2, testthat (>= 2.1.0)
Depends: R (>= 3.5.0), SummarizedExperiment
RoxygenNote: 6.1.1
biocViews: Software, GeneExpression, BiomedicalInformatics, RNASeq,
        Pathways, Transcriptomics, DimensionReduction, Classification
git_url: https://git.bioconductor.org/packages/ssPATHS
git_branch: RELEASE_3_20
git_last_commit: 37a0886
git_last_commit_date: 2024-10-29
Repository: Bioconductor 3.20
Date/Publication: 2024-10-29
NeedsCompilation: no
Packaged: 2024-10-30 03:04:45 UTC; biocbuild
Built: R 4.4.2; ; 2024-12-21 08:26:36 UTC; unix
