{% set version = "1.28.0" %}
{% set name = "SPONGE" %}
{% set bioc = "3.20" %}

about:
  description: 'This package provides methods to efficiently detect competitive endogeneous RNA interactions between two genes. Such interactions are mediated by one or several miRNAs such that both gene and miRNA expression data for a larger number of samples is needed as input. The SPONGE package now also includes spongEffects: ceRNA modules offer patient-specific insights into the miRNA regulatory landscape.'
  home: https://bioconductor.org/packages/{{ bioc }}/bioc/html/{{ name }}.html
  license: GPL (>=3)
  license_file: '{{ environ["PREFIX"] }}/lib/R/share/licenses/GPL-3'
  summary: Sparse Partial Correlations On Gene Expression

build:
  noarch: generic
  number: 0
  rpaths:
    - lib/R/lib/
    - lib/
  run_exports: '{{ pin_subpackage("bioconductor-sponge", max_pin="x.x") }}'

package:
  name: bioconductor-{{ name|lower }}
  version: '{{ version }}'

# Suggests: testthat, knitr, rmarkdown, visNetwork, ggrepel, gridExtra, digest, doParallel, bigmemory, GSVA
requirements:

  host:
    - bioconductor-biobase >=2.66.0,<2.67.0
    - bioconductor-biomart >=2.62.0,<2.63.0
    - bioconductor-complexheatmap >=2.22.0,<2.23.0
    - r-base
    - r-caret
    - r-cvms
    - r-data.table
    - r-dorng
    - r-dplyr
    - r-expm
    - r-foreach
    - r-ggplot2
    - r-ggpubr
    - r-ggridges
    - r-glmnet
    - r-grbase
    - r-igraph
    - r-iterators
    - r-logging
    - r-mass
    - r-metbrewer
    - r-ppcor
    - r-randomforest
    - r-rlang
    - r-stringr
    - r-tidyr
    - r-tidyverse
    - r-tnet

  run:
    - bioconductor-biobase >=2.66.0,<2.67.0
    - bioconductor-biomart >=2.62.0,<2.63.0
    - bioconductor-complexheatmap >=2.22.0,<2.23.0
    - r-base
    - r-caret
    - r-cvms
    - r-data.table
    - r-dorng
    - r-dplyr
    - r-expm
    - r-foreach
    - r-ggplot2
    - r-ggpubr
    - r-ggridges
    - r-glmnet
    - r-grbase
    - r-igraph
    - r-iterators
    - r-logging
    - r-mass
    - r-metbrewer
    - r-ppcor
    - r-randomforest
    - r-rlang
    - r-stringr
    - r-tidyr
    - r-tidyverse
    - r-tnet

source:
  md5: 2133e52cd4046b2fa7e40988ac2cdc0c
  url:
    - https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/{{ name }}_{{ version }}.tar.gz
    - https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/Archive/{{ name }}/{{ name }}_{{ version }}.tar.gz
    - https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz
    - https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz

test:
  commands:
    - $R -e "library('{{ name }}')"

