addFeatureStats	addFeatureStats
addGeneLengths	addGeneLengths
BASiCSEstimate	BASiCSEstimate
BASiCSEstimate.matrix	BASiCSEstimate
BASiCSEstimate.SingleCellExperiment	BASiCSEstimate
BASiCSParams	BASiCSParams
BASiCSParams-class	BASiCSParams
BASiCSSimulate	BASiCSSimulate
bridge	bridge
bringItemsForward	bringItemsForward
checkDependencies	checkDependencies
co.var	co.var
compareSCEs	compareSCEs
diffSCEs	diffSCEs
expandParams	expandParams
expandParams,BASiCSParams-method	expandParams
expandParams,LunParams-method	expandParams
expandParams,SplatParams-method	expandParams
getBetaStepProbs	getBetaStepProbs
getCounts	getCounts
getLNormFactors	getLNormFactors
getParam	getParam
getParam,Params-method	getParam
getParams	getParams
getPathOrder	getPathOrder
kersplatEstBCV	kersplatEstBCV
kersplatEstimate	kersplatEstimate
kersplatEstimate.matrix	kersplatEstimate
kersplatEstimate.SingleCellExperiment	kersplatEstimate
kersplatEstLib	kersplatEstLib
kersplatEstMean	kersplatEstMean
kersplatGenNetwork	kersplatGenNetwork
KersplatParams	KersplatParams
KersplatParams-class	KersplatParams
kersplatSample	kersplatSample
kersplatSelectRegs	kersplatSelectRegs
kersplatSetup	kersplatSetup
kersplatSimAmbientCounts	kersplatSimAmbientCounts
kersplatSimCellCounts	kersplatSimCellCounts
kersplatSimCellMeans	kersplatSimCellMeans
kersplatSimCounts	kersplatSimCounts
kersplatSimGeneMeans	kersplatSimGeneMeans
kersplatSimLibSizes	kersplatSimLibSizes
kersplatSimPaths	kersplatSimPaths
kersplatSimulate	kersplatSimulate
listSims	listSims
logistic	logistic
lun2Estimate	lun2Estimate
lun2Estimate.matrix	lun2Estimate
lun2Estimate.SingleCellExperiment	lun2Estimate
Lun2Params	Lun2Params
Lun2Params-class	Lun2Params
lun2Simulate	lun2Simulate
lunEstimate	lunEstimate
lunEstimate.matrix	lunEstimate
lunEstimate.SingleCellExperiment	lunEstimate
LunParams	LunParams
LunParams-class	LunParams
lunSimulate	lunSimulate
makeCompPanel	makeCompPanel
makeDiffPanel	makeDiffPanel
makeOverallPanel	makeOverallPanel
mfaEstimate	mfaEstimate
mfaEstimate.matrix	mfaEstimate
mfaEstimate.SingleCellExperiment	mfaEstimate
MFAParams	MFAParams
MFAParams-class	MFAParams
mfaSimulate	mfaSimulate
minimiseSCE	minimiseSCE
mockBulkeQTL	mockBulkeQTL
mockBulkMatrix	mockBulkMatrix
mockGFF	mockGFF
mockVCF	mockVCF
newBASiCSParams	newParams
newKersplatParams	newParams
newLun2Params	newParams
newLunParams	newParams
newMFAParams	newParams
newParams	newParams
newPhenoParams	newParams
newSCDDParams	newParams
newSimpleParams	newParams
newSparseDCParams	newParams
newSplatParams	newParams
newSplatPopParams	newParams
newZINBParams	newParams
Params	Params
Params-class	Params
phenoEstimate	phenoEstimate
phenoEstimate.matrix	phenoEstimate
phenoEstimate.SingleCellExperiment	phenoEstimate
PhenoParams	PhenoParams
PhenoParams-class	PhenoParams
phenoSimulate	phenoSimulate
rbindMatched	rbindMatched
sampleDensity	sampleDensity
scDDEstimate	scDDEstimate
scDDEstimate.default	scDDEstimate
scDDEstimate.matrix	scDDEstimate
scDDEstimate.SingleCellExperiment	scDDEstimate
SCDDParams	SCDDParams
SCDDParams-class	SCDDParams
scDDSimulate	scDDSimulate
selectFit	selectFit
setParam	setParam
setParam,BASiCSParams-method	setParam
setParam,KersplatParams-method	setParam
setParam,Lun2Params-method	setParam
setParam,LunParams-method	setParam
setParam,Params-method	setParam
setParam,PhenoParams-method	setParam
setParam,SCDDParams-method	setParam
setParam,SplatParams-method	setParam
setParam,SplatPopParams-method	setParam
setParam,ZINBParams-method	setParam
setParams	setParams
setParams,KersplatParams-method	setParams
setParams,Params-method	setParams
setParams,SplatParams-method	setParams
setParamsUnchecked	setParamsUnchecked
setParamUnchecked	setParamUnchecked
setParamUnchecked,Params-method	setParamUnchecked
showDFs	showDFs
showPP	showPP
showValues	showValues
simpleEstimate	simpleEstimate
simpleEstimate.matrix	simpleEstimate
simpleEstimate.SingleCellExperiment	simpleEstimate
SimpleParams	SimpleParams
SimpleParams-class	SimpleParams
simpleSimulate	simpleSimulate
sparseDCEstimate	sparseDCEstimate
sparseDCEstimate.matrix	sparseDCEstimate
sparseDCEstimate.SingleCellExperiment	sparseDCEstimate
SparseDCParams	SparseDCParams
SparseDCParams-class	SparseDCParams
sparseDCSimulate	sparseDCSimulate
sparsifyMatrices	sparsifyMatrices
splatEstBCV	splatEstBCV
splatEstDropout	splatEstDropout
splatEstimate	splatEstimate
splatEstimate.matrix	splatEstimate
splatEstimate.SingleCellExperiment	splatEstimate
splatEstLib	splatEstLib
splatEstMean	splatEstMean
splatEstOutlier	splatEstOutlier
SplatParams	SplatParams
SplatParams-class	SplatParams
splatPopAssignMeans	splatPopAssignMeans
splatPopCleanSCE	splatPopCleanSCE
splatPopeQTLEffects	splatPopeQTLEffects
splatPopEstimate	splatPopEstimate
splatPopEstimateEffectSize	splatPopEstimateEffectSize
splatPopEstimateMeanCV	splatPopEstimateMeanCV
splatPopGroupEffects	splatPopGroupEffects
SplatPopParams	SplatPopParams
SplatPopParams-class	SplatPopParams
splatPopParseGenes	splatPopParseGenes
splatPopParseVCF	splatPopParseVCF
splatPopQuantNorm	splatPopQuantNorm
splatPopQuantNormKey	splatPopQuantNormKey
splatPopSimEffects	splatPopSimEffects
splatPopSimGeneMeans	splatPopSimGeneMeans
splatPopSimMeans	splatPopSimMeans
splatPopSimulate	splatPopSimulate
splatPopSimulateMeans	splatPopSimulateMeans
splatPopSimulateSample	splatPopSimulateSample
splatPopSimulateSC	splatPopSimulateSC
splatSimBatchCellMeans	splatSimBatchCellMeans
splatSimBatchEffects	splatSimBatchEffects
splatSimBCVMeans	splatSimBCVMeans
splatSimCellMeans	splatSimCellMeans
splatSimDE	splatSimDE
splatSimDropout	splatSimDropout
splatSimGeneMeans	splatSimGeneMeans
splatSimGroupCellMeans	splatSimCellMeans
splatSimGroupDE	splatSimDE
splatSimLibSizes	splatSimLibSizes
splatSimPathCellMeans	splatSimCellMeans
splatSimPathDE	splatSimDE
splatSimSingleCellMeans	splatSimCellMeans
splatSimTrueCounts	splatSimTrueCounts
splatSimulate	splatSimulate
splatSimulateGroups	splatSimulate
splatSimulatePaths	splatSimulate
splatSimulateSingle	splatSimulate
splatter	splatter
summariseDiff	summariseDiff
summariseKS	summariseKS
summariseStats	summariseStats
tidyStatSumm	tidyStatSumm
winsorize	winsorize
zinbEstimate	zinbEstimate
zinbEstimate.matrix	zinbEstimate
zinbEstimate.SingleCellExperiment	zinbEstimate
ZINBParams	ZINBParams
ZINBParams-class	ZINBParams
zinbSimulate	zinbSimulate
