# This file created by conda-build 3.18.9
# meta.yaml template originally from:
# /opt/recipe, last modified Sun Nov  3 15:51:44 2019
# ------------------------------------------------

package:
    name: bioconductor-spectraltad
    version: 1.2.0
source:
    md5: 5cb1b4aba2ae749a0630b9577dfc890a
    url:
        - https://bioarchive.galaxyproject.org/SpectralTAD_1.2.0.tar.gz
        - https://bioconductor.org/packages/3.10/bioc/src/contrib/SpectralTAD_1.2.0.tar.gz
        - https://depot.galaxyproject.org/software/bioconductor-spectraltad/bioconductor-spectraltad_1.2.0_src_all.tar.gz
build:
    noarch: generic
    number: '0'
    rpaths:
        - lib/
        - lib/R/lib/
    string: r36_0
requirements:
    host:
        - _libgcc_mutex 0.1 main
        - _r-mutex 1.0.1 anacondar_1
        - binutils_impl_linux-64 2.31.1 h7fc9f1b_2
        - binutils_linux-64 2.31.1 h6176602_12
        - bioconductor-biobase 2.46.0 r36h516909a_0
        - bioconductor-biocgenerics 0.32.0 r36_0
        - bioconductor-biocparallel 1.20.0 r36he1b5a44_0
        - bioconductor-biostrings 2.54.0 r36h516909a_0
        - bioconductor-cghbase 1.46.0 r36_0
        - bioconductor-cghcall 2.48.0 r36_0
        - bioconductor-delayedarray 0.12.0 r36h516909a_0
        - bioconductor-dnacopy 1.60.0 r36h6e990d7_0
        - bioconductor-genomeinfodb 1.22.0 r36_0
        - bioconductor-genomeinfodbdata 1.2.2 r36_0
        - bioconductor-genomicranges 1.38.0 r36h516909a_0
        - bioconductor-hiccompare 1.8.0 r36_0
        - bioconductor-impute 1.60.0 r36h6e990d7_0
        - bioconductor-interactionset 1.14.0 r36he1b5a44_0
        - bioconductor-iranges 2.20.0 r36h516909a_0
        - bioconductor-limma 3.42.0 r36h516909a_0
        - bioconductor-marray 1.64.0 r36_0
        - bioconductor-qdnaseq 1.22.0 r36_0
        - bioconductor-rhdf5 2.30.0 r36he1b5a44_0
        - bioconductor-rhdf5lib 1.8.0 r36h516909a_0
        - bioconductor-rhtslib 1.18.0 r36h516909a_0
        - bioconductor-rsamtools 2.2.0 r36he1b5a44_0
        - bioconductor-s4vectors 0.24.0 r36h516909a_0
        - bioconductor-summarizedexperiment 1.16.0 r36_0
        - bioconductor-xvector 0.26.0 r36h516909a_0
        - bioconductor-zlibbioc 1.32.0 r36h516909a_0
        - bwidget 1.9.13 0
        - bzip2 1.0.8 h516909a_1
        - ca-certificates 2019.9.11 hecc5488_0
        - cairo 1.16.0 hfb77d84_1002
        - curl 7.65.3 hf8cf82a_0
        - fontconfig 2.13.1 h86ecdb6_1001
        - freetype 2.10.0 he983fc9_1
        - fribidi 1.0.5 h516909a_1002
        - gcc_impl_linux-64 7.3.0 habb00fd_2
        - gcc_linux-64 7.3.0 h553295d_12
        - gettext 0.19.8.1 hc5be6a0_1002
        - gfortran_impl_linux-64 7.3.0 hdf63c60_2
        - gfortran_linux-64 7.3.0 h553295d_12
        - glib 2.58.3 h6f030ca_1002
        - graphite2 1.3.13 hf484d3e_1000
        - gsl 2.5 h294904e_1
        - gxx_impl_linux-64 7.3.0 hdf63c60_2
        - gxx_linux-64 7.3.0 h553295d_12
        - harfbuzz 2.4.0 h9f30f68_3
        - icu 64.2 he1b5a44_1
        - jpeg 9c h14c3975_1001
        - krb5 1.16.3 h05b26f9_1001
        - libblas 3.8.0 14_openblas
        - libcblas 3.8.0 14_openblas
        - libcurl 7.65.3 hda55be3_0
        - libedit 3.1.20170329 hf8c457e_1001
        - libffi 3.2.1 he1b5a44_1006
        - libgcc-ng 9.1.0 hdf63c60_0
        - libgfortran-ng 7.3.0 hdf63c60_2
        - libiconv 1.15 h516909a_1005
        - liblapack 3.8.0 14_openblas
        - libopenblas 0.3.7 h6e990d7_2
        - libpng 1.6.37 hed695b0_0
        - libssh2 1.8.2 h22169c7_2
        - libstdcxx-ng 9.1.0 hdf63c60_0
        - libtiff 4.0.10 hfc65ed5_1004
        - libuuid 2.32.1 h14c3975_1000
        - libxcb 1.13 h14c3975_1002
        - libxml2 2.9.10 hee79883_0
        - lz4-c 1.8.3 he1b5a44_1001
        - make 4.2.1 h14c3975_2004
        - ncurses 6.1 hf484d3e_1002
        - openssl 1.1.1c h516909a_0
        - pango 1.42.4 ha030887_1
        - pcre 8.43 he1b5a44_0
        - pixman 0.38.0 h516909a_1003
        - pthread-stubs 0.4 h14c3975_1001
        - r-assertthat 0.2.1 r36h6115d3f_1
        - r-backports 1.1.5 r36hcdcec82_0
        - r-base 3.6.1 hba50c9b_5
        - r-bh 1.69.0_1 r36h6115d3f_1
        - r-bitops 1.0_6 r36hcdcec82_1003
        - r-cli 1.1.0 r36h6115d3f_2
        - r-cluster 2.1.0 r36h9bbef5b_2
        - r-codetools 0.2_16 r36h6115d3f_1001
        - r-colorspace 1.4_1 r36hcdcec82_1
        - r-crayon 1.3.4 r36h6115d3f_1002
        - r-data.table 1.12.6 r36hcdcec82_0
        - r-digest 0.6.22 r36h0357c0b_0
        - r-dplyr 0.8.3 r36h0357c0b_3
        - r-ellipsis 0.3.0 r36hcdcec82_0
        - r-fansi 0.4.0 r36hcdcec82_1001
        - r-formatr 1.7 r36h6115d3f_1
        - r-futile.logger 1.4.3 r36h6115d3f_1002
        - r-futile.options 1.0.1 r36h6115d3f_1001
        - r-future 1.14.0 r36h6115d3f_1
        - r-future.apply 1.3.0 r36h6115d3f_1
        - r-ggplot2 3.2.1 r36h6115d3f_0
        - r-globals 0.12.4 r36h6115d3f_1
        - r-glue 1.3.1 r36hcdcec82_1
        - r-gridextra 2.3 r36h6115d3f_1002
        - r-gtable 0.3.0 r36h6115d3f_2
        - r-gtools 3.8.1 r36hcdcec82_1003
        - r-kernsmooth 2.23_15 r36h9bbef5b_1004
        - r-labeling 0.3 r36h6115d3f_1002
        - r-lambda.r 1.2.4 r36h6115d3f_0
        - r-lattice 0.20_38 r36hcdcec82_1002
        - r-lazyeval 0.2.2 r36hcdcec82_1
        - r-listenv 0.7.0 r36h6115d3f_1002
        - r-magrittr 1.5 r36h6115d3f_1002
        - r-mass 7.3_51.4 r36hcdcec82_1
        - r-matrix 1.2_17 r36hcdcec82_1
        - r-matrixstats 0.55.0 r36hcdcec82_0
        - r-mgcv 1.8_29 r36hcdcec82_0
        - r-munsell 0.5.0 r36h6115d3f_1002
        - r-nlme 3.1_141 r36h9bbef5b_1
        - r-pheatmap 1.0.12 r36h6115d3f_1
        - r-pillar 1.4.2 r36h6115d3f_2
        - r-pkgconfig 2.0.3 r36h6115d3f_0
        - r-plogr 0.2.0 r36h6115d3f_1002
        - r-plyr 1.8.4 r36h0357c0b_1003
        - r-primme 3.0_0 r36h0357c0b_0
        - r-purrr 0.3.3 r36hcdcec82_0
        - r-r.methodss3 1.7.1 r36h6115d3f_1002
        - r-r.oo 1.23.0 r36h6115d3f_0
        - r-r.utils 2.9.0 r36h6115d3f_1
        - r-r6 2.4.0 r36h6115d3f_2
        - r-rcolorbrewer 1.1_2 r36h6115d3f_1002
        - r-rcpp 1.0.2 r36h0357c0b_0
        - r-rcurl 1.95_4.12 r36hcdcec82_1
        - r-reshape2 1.4.3 r36h0357c0b_1004
        - r-rlang 0.4.1 r36hcdcec82_0
        - r-scales 1.0.0 r36h0357c0b_1002
        - r-snow 0.4_3 r36h6115d3f_1001
        - r-snowfall 1.84_6.1 r36h6115d3f_1002
        - r-stringi 1.4.3 r36h0e574ca_3
        - r-stringr 1.4.0 r36h6115d3f_1
        - r-tibble 2.1.3 r36hcdcec82_1
        - r-tidyselect 0.2.5 r36h0357c0b_1001
        - r-utf8 1.1.4 r36hcdcec82_1001
        - r-vctrs 0.2.0 r36hcdcec82_1
        - r-viridislite 0.3.0 r36h6115d3f_1002
        - r-withr 2.1.2 r36h6115d3f_1001
        - r-zeallot 0.1.0 r36h6115d3f_1001
        - readline 8.0 hf8c457e_0
        - sed 4.7 h1bed415_1000
        - tk 8.6.9 hed695b0_1003
        - tktable 2.10 h555a92e_3
        - xorg-kbproto 1.0.7 h14c3975_1002
        - xorg-libice 1.0.10 h516909a_0
        - xorg-libsm 1.2.3 h84519dc_1000
        - xorg-libx11 1.6.9 h516909a_0
        - xorg-libxau 1.0.9 h14c3975_0
        - xorg-libxdmcp 1.1.3 h516909a_0
        - xorg-libxext 1.3.4 h516909a_0
        - xorg-libxrender 0.9.10 h516909a_1002
        - xorg-renderproto 0.11.1 h14c3975_1002
        - xorg-xextproto 7.3.0 h14c3975_1002
        - xorg-xproto 7.0.31 h14c3975_1007
        - xz 5.2.4 h14c3975_1001
        - zlib 1.2.11 h516909a_1006
        - zstd 1.4.3 h3b9ef0a_0
    run:
        - bioconductor-biocparallel >=1.20.0,<1.21.0
        - bioconductor-genomicranges >=1.38.0,<1.39.0
        - bioconductor-hiccompare >=1.8.0,<1.9.0
        - r-base >=3.6,<3.7.0a0
        - r-cluster
        - r-dplyr
        - r-magrittr
        - r-matrix
        - r-primme
test:
    commands:
        - $R -e "library('SpectralTAD')"
about:
    description: SpectralTAD is an R package designed to identify Topologically Associated
        Domains (TADs) from Hi-C contact matrices. It uses a modified version of spectral
        clustering that uses a sliding window to quickly detect TADs. The function
        works on a range of different formats of contact matrices and returns a bed
        file of TAD coordinates. The method does not require users to adjust any parameters
        to work and gives them control over the number of hierarchical levels to be
        returned.
    home: https://bioconductor.org/packages/3.10/bioc/html/SpectralTAD.html
    license: MIT + file LICENSE
    license_file: LICENSE
    summary: 'SpectralTAD: Hierarchical TAD detection using spectral clustering'
extra:
    copy_test_source_files: true
    final: true
