$,MsBackend-method	MsBackend
$,MsBackendDataFrame-method	hidden_aliases
$,Spectra-method	Spectra
$<-,MsBackend-method	MsBackend
$<-,MsBackendDataFrame-method	hidden_aliases
$<-,MsBackendHdf5Peaks-method	hidden_aliases
$<-,MsBackendMzR-method	hidden_aliases
$<-,Spectra-method	Spectra
acquisitionNum,MsBackend-method	MsBackend
acquisitionNum,MsBackendDataFrame-method	hidden_aliases
acquisitionNum,Spectra-method	Spectra
addProcessing	hidden_aliases
addProcessing,Spectra-method	Spectra
applyProcessing	Spectra
backendInitialize	hidden_aliases
backendInitialize,MsBackend-method	MsBackend
backendInitialize,MsBackendDataFrame-method	MsBackend
backendInitialize,MsBackendHdf5Peaks-method	hidden_aliases
backendInitialize,MsBackendMzR-method	hidden_aliases
backendMerge	hidden_aliases
backendMerge,list-method	MsBackend
backendMerge,MsBackend-method	MsBackend
backendMerge,MsBackendDataFrame-method	hidden_aliases
backendMerge,MsBackendHdf5Peaks-method	hidden_aliases
bin,numeric-method	hidden_aliases
bin,Spectra-method	Spectra
c,Spectra-method	Spectra
centroided,MsBackend-method	MsBackend
centroided,MsBackendDataFrame-method	hidden_aliases
centroided,Spectra-method	Spectra
centroided<-,MsBackend-method	MsBackend
centroided<-,MsBackendDataFrame-method	hidden_aliases
centroided<-,Spectra-method	Spectra
class:MsBackend	MsBackend
collisionEnergy,MsBackend-method	MsBackend
collisionEnergy,MsBackendDataFrame-method	hidden_aliases
collisionEnergy,Spectra-method	Spectra
collisionEnergy<-,MsBackend-method	MsBackend
collisionEnergy<-,MsBackendDataFrame-method	hidden_aliases
collisionEnergy<-,Spectra-method	Spectra
combinePeaks	combinePeaks
combineSpectra	Spectra
compareSpectra,Spectra,missing-method	Spectra
compareSpectra,Spectra,Spectra-method	Spectra
computeMzDeltas	plotMzDelta
concatenateSpectra	Spectra
containsMz	hidden_aliases
containsMz,Spectra-method	Spectra
containsNeutralLoss	hidden_aliases
containsNeutralLoss,Spectra-method	Spectra
dataOrigin,MsBackend-method	MsBackend
dataOrigin,MsBackendDataFrame-method	hidden_aliases
dataOrigin,Spectra-method	Spectra
dataOrigin<-,MsBackend-method	MsBackend
dataOrigin<-,MsBackendDataFrame-method	hidden_aliases
dataOrigin<-,Spectra-method	Spectra
dataStorage,MsBackend-method	MsBackend
dataStorage,MsBackendDataFrame-method	hidden_aliases
dataStorage,Spectra-method	Spectra
dataStorage<-,MsBackend-method	MsBackend
dataStorage<-,MsBackendDataFrame-method	hidden_aliases
dropNaSpectraVariables	hidden_aliases
dropNaSpectraVariables,MsBackend-method	MsBackend
dropNaSpectraVariables,Spectra-method	Spectra
estimatePrecursorIntensity	Spectra
export	hidden_aliases
export,MsBackend-method	MsBackend
export,MsBackendMzR-method	hidden_aliases
export,Spectra-method	Spectra
filterAcquisitionNum,MsBackend-method	MsBackend
filterAcquisitionNum,MsBackendDataFrame-method	hidden_aliases
filterAcquisitionNum,Spectra-method	Spectra
filterDataOrigin,MsBackend-method	MsBackend
filterDataOrigin,Spectra-method	Spectra
filterDataStorage,MsBackend-method	MsBackend
filterDataStorage,Spectra-method	Spectra
filterEmptySpectra,MsBackend-method	MsBackend
filterEmptySpectra,Spectra-method	Spectra
filterIntensity,Spectra-method	Spectra
filterIsolationWindow,MsBackend-method	MsBackend
filterIsolationWindow,Spectra-method	Spectra
filterMsLevel,MsBackend-method	MsBackend
filterMsLevel,Spectra-method	Spectra
filterMzRange	hidden_aliases
filterMzRange,Spectra-method	Spectra
filterMzValues	hidden_aliases
filterMzValues,Spectra-method	Spectra
filterPolarity,MsBackend-method	MsBackend
filterPolarity,Spectra-method	Spectra
filterPrecursorCharge,MsBackend-method	MsBackend
filterPrecursorCharge,Spectra-method	Spectra
filterPrecursorMz,MsBackend-method	MsBackend
filterPrecursorMz,Spectra-method	Spectra
filterPrecursorScan,MsBackend-method	MsBackend
filterPrecursorScan,Spectra-method	Spectra
filterRt,MsBackend-method	MsBackend
filterRt,Spectra-method	Spectra
hidden_aliases	hidden_aliases
intensity,MsBackend-method	MsBackend
intensity,MsBackendDataFrame-method	hidden_aliases
intensity,MsBackendHdf5Peaks-method	hidden_aliases
intensity,MsBackendMzR-method	hidden_aliases
intensity,Spectra-method	Spectra
intensity<-,MsBackend-method	MsBackend
intensity<-,MsBackendDataFrame-method	hidden_aliases
intensity<-,MsBackendHdf5Peaks-method	hidden_aliases
intensity<-,MsBackendMzR-method	hidden_aliases
ionCount,MsBackend-method	MsBackend
ionCount,MsBackendDataFrame-method	hidden_aliases
ionCount,MsBackendHdf5Peaks-method	hidden_aliases
ionCount,MsBackendMzR-method	hidden_aliases
ionCount,Spectra-method	Spectra
isCentroided,MsBackend-method	MsBackend
isCentroided,MsBackendDataFrame-method	hidden_aliases
isCentroided,MsBackendHdf5Peaks-method	hidden_aliases
isCentroided,MsBackendMzR-method	hidden_aliases
isCentroided,Spectra-method	Spectra
isEmpty,MsBackend-method	MsBackend
isEmpty,MsBackendDataFrame-method	hidden_aliases
isEmpty,MsBackendHdf5Peaks-method	hidden_aliases
isEmpty,MsBackendMzR-method	hidden_aliases
isEmpty,Spectra-method	Spectra
isolationWindowLowerMz,MsBackend-method	MsBackend
isolationWindowLowerMz,MsBackendDataFrame-method	hidden_aliases
isolationWindowLowerMz,Spectra-method	Spectra
isolationWindowLowerMz<-,MsBackend-method	MsBackend
isolationWindowLowerMz<-,MsBackendDataFrame-method	hidden_aliases
isolationWindowLowerMz<-,Spectra-method	Spectra
isolationWindowTargetMz,MsBackend-method	MsBackend
isolationWindowTargetMz,MsBackendDataFrame-method	hidden_aliases
isolationWindowTargetMz,Spectra-method	Spectra
isolationWindowTargetMz<-,MsBackend-method	MsBackend
isolationWindowTargetMz<-,MsBackendDataFrame-method	hidden_aliases
isolationWindowTargetMz<-,Spectra-method	Spectra
isolationWindowUpperMz,MsBackend-method	MsBackend
isolationWindowUpperMz,MsBackendDataFrame-method	hidden_aliases
isolationWindowUpperMz,Spectra-method	Spectra
isolationWindowUpperMz<-,MsBackend-method	MsBackend
isolationWindowUpperMz<-,MsBackendDataFrame-method	hidden_aliases
isolationWindowUpperMz<-,Spectra-method	Spectra
isReadOnly	hidden_aliases
isReadOnly,MsBackend-method	MsBackend
joinPeaks	joinPeaks
joinPeaksGnps	joinPeaks
joinSpectraData	Spectra
length,MsBackend-method	MsBackend
length,MsBackendDataFrame-method	hidden_aliases
length,Spectra-method	Spectra
lengths,MsBackend-method	MsBackend
lengths,MsBackendDataFrame-method	hidden_aliases
lengths,MsBackendHdf5Peaks-method	hidden_aliases
lengths,MsBackendMzR-method	hidden_aliases
lengths,Spectra-method	Spectra
MsBackend	MsBackend
MsBackend-class	MsBackend
MsBackendDataFrame	MsBackend
MsBackendDataFrame-class	MsBackend
MsBackendHdf5Peaks	MsBackend
MsBackendMzR	MsBackend
MsBackendMzR-class	MsBackend
msLevel,MsBackend-method	MsBackend
msLevel,MsBackendDataFrame-method	hidden_aliases
msLevel,Spectra-method	Spectra
mz,MsBackend-method	MsBackend
mz,MsBackendDataFrame-method	hidden_aliases
mz,MsBackendHdf5Peaks-method	hidden_aliases
mz,MsBackendMzR-method	hidden_aliases
mz,Spectra-method	Spectra
mz<-,MsBackend-method	MsBackend
mz<-,MsBackendDataFrame-method	hidden_aliases
mz<-,MsBackendHdf5Peaks-method	hidden_aliases
mz<-,MsBackendMzR-method	hidden_aliases
peaksData	hidden_aliases
peaksData,MsBackend-method	MsBackend
peaksData,MsBackendDataFrame-method	hidden_aliases
peaksData,MsBackendHdf5Peaks-method	hidden_aliases
peaksData,MsBackendMzR-method	hidden_aliases
peaksData,Spectra-method	Spectra
peaksData<-	hidden_aliases
peaksData<-,MsBackend-method	MsBackend
peaksData<-,MsBackendDataFrame-method	hidden_aliases
peaksData<-,MsBackendHdf5Peaks-method	hidden_aliases
pickPeaks	hidden_aliases
pickPeaks,Spectra-method	Spectra
plotMzDelta	plotMzDelta
plotSpectra	spectra-plotting
plotSpectraMirror	spectra-plotting
plotSpectraMirror,Spectra-method	spectra-plotting
plotSpectraOverlay	spectra-plotting
polarity,MsBackend-method	MsBackend
polarity,MsBackendDataFrame-method	hidden_aliases
polarity,Spectra-method	Spectra
polarity<-,MsBackend-method	MsBackend
polarity<-,MsBackendDataFrame-method	hidden_aliases
polarity<-,Spectra-method	Spectra
ppm	hidden_aliases
precScanNum,MsBackend-method	MsBackend
precScanNum,MsBackendDataFrame-method	hidden_aliases
precScanNum,Spectra-method	Spectra
precursorCharge,MsBackend-method	MsBackend
precursorCharge,MsBackendDataFrame-method	hidden_aliases
precursorCharge,Spectra-method	Spectra
precursorIntensity,MsBackend-method	MsBackend
precursorIntensity,MsBackendDataFrame-method	hidden_aliases
precursorIntensity,Spectra-method	Spectra
precursorMz,MsBackend-method	MsBackend
precursorMz,MsBackendDataFrame-method	hidden_aliases
precursorMz,Spectra-method	Spectra
processingLog	Spectra
replaceIntensitiesBelow	hidden_aliases
replaceIntensitiesBelow,Spectra-method	Spectra
reset	hidden_aliases
reset,MsBackend-method	MsBackend
reset,Spectra-method	Spectra
rtime,MsBackend-method	MsBackend
rtime,MsBackendDataFrame-method	hidden_aliases
rtime,Spectra-method	Spectra
rtime<-,MsBackend-method	MsBackend
rtime<-,MsBackendDataFrame-method	hidden_aliases
rtime<-,Spectra-method	Spectra
scanIndex,MsBackend-method	MsBackend
scanIndex,MsBackendDataFrame-method	hidden_aliases
scanIndex,Spectra-method	Spectra
selectSpectraVariables	hidden_aliases
selectSpectraVariables,MsBackend-method	MsBackend
selectSpectraVariables,MsBackendDataFrame-method	hidden_aliases
selectSpectraVariables,Spectra-method	Spectra
setBackend	hidden_aliases
setBackend,Spectra,MsBackend-method	Spectra
show,MsBackendDataFrame-method	hidden_aliases
show,MsBackendHdf5Peaks-method	hidden_aliases
show,MsBackendMzR-method	hidden_aliases
show,Spectra-method	hidden_aliases
smooth,Spectra-method	Spectra
smoothed,MsBackend-method	MsBackend
smoothed,MsBackendDataFrame-method	hidden_aliases
smoothed,Spectra-method	Spectra
smoothed<-,MsBackend-method	MsBackend
smoothed<-,MsBackendDataFrame-method	hidden_aliases
smoothed<-,Spectra-method	Spectra
Spectra	Spectra
Spectra,ANY-method	Spectra
Spectra,character-method	Spectra
Spectra,missing-method	Spectra
Spectra,MsBackend-method	Spectra
Spectra-class	Spectra
spectra-plotting	spectra-plotting
spectraData,MsBackend-method	MsBackend
spectraData,MsBackendDataFrame-method	hidden_aliases
spectraData,MsBackendHdf5Peaks-method	hidden_aliases
spectraData,MsBackendMzR-method	hidden_aliases
spectraData,Spectra-method	Spectra
spectraData<-,MsBackend-method	MsBackend
spectraData<-,MsBackendDataFrame-method	hidden_aliases
spectraData<-,MsBackendHdf5Peaks-method	hidden_aliases
spectraData<-,MsBackendMzR-method	hidden_aliases
spectraData<-,Spectra-method	Spectra
spectraNames,MsBackend-method	MsBackend
spectraNames,MsBackendDataFrame-method	hidden_aliases
spectraNames,MsBackendMzR-method	hidden_aliases
spectraNames,Spectra-method	Spectra
spectraNames<-,MsBackend-method	MsBackend
spectraNames<-,MsBackendDataFrame-method	hidden_aliases
spectraNames<-,MsBackendMzR-method	hidden_aliases
spectraNames<-,Spectra-method	Spectra
spectrapply	hidden_aliases
spectrapply,Spectra-method	Spectra
spectraVariables,MsBackend-method	MsBackend
spectraVariables,MsBackendDataFrame-method	hidden_aliases
spectraVariables,MsBackendMzR-method	hidden_aliases
spectraVariables,Spectra-method	Spectra
split,MsBackend,ANY-method	MsBackend
split,MsBackendDataFrame,ANY-method	hidden_aliases
split,Spectra,ANY-method	Spectra
tic,MsBackend-method	MsBackend
tic,MsBackendDataFrame-method	hidden_aliases
tic,Spectra-method	Spectra
[,MsBackend-method	MsBackend
[,MsBackendDataFrame-method	hidden_aliases
[,MsBackendHdf5Peaks-method	hidden_aliases
[,Spectra-method	Spectra
[[,MsBackend-method	MsBackend
[[,Spectra-method	Spectra
[[<-,MsBackend-method	MsBackend
[[<-,Spectra-method	Spectra
