Package: spatialDE
Title: R wrapper for SpatialDE
Date: 2021-09-09
Version: 1.0.0
Authors@R: c(
    person("Davide", "Corso", role = c("aut", "cre"),
           email = "davide.corso.2@phd.unipd.it",
           comment = c(ORCID = "0000-0001-8845-3693")),
    person("Milan", "Malfait", role = "aut",
           email = "milan.malfait94@gmail.com",
           comment = c(ORCID = "0000-0001-9144-3701")),
    person("Lambda", "Moses", role = "aut", 
           email = "dlu2@caltech.edu",
           comment = c(ORCID = "0000-0002-7092-9427")))
Description: SpatialDE is a method to find spatially variable genes (SVG) from
    spatial transcriptomics data. This package provides wrappers to use the
    Python SpatialDE library in R, using reticulate and basilisk.
License: MIT + file LICENSE
Encoding: UTF-8
LazyData: FALSE
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.1.1
URL: https://github.com/sales-lab/spatialDE,
        https://bioconductor.org/packages/spatialDE/
BugReports: https://github.com/sales-lab/spatialDE/issues
Depends: R (>= 4.1)
Imports: reticulate, basilisk, checkmate, stats, SpatialExperiment,
        methods, SummarizedExperiment, Matrix, S4Vectors, ggplot2,
        ggrepel, scales, gridExtra
Suggests: knitr, BiocStyle, rmarkdown, testthat (>= 3.0.0)
VignetteBuilder: knitr
biocViews: Software, Transcriptomics
StagedInstall: no
Config/testthat/edition: 3
git_url: https://git.bioconductor.org/packages/spatialDE
git_branch: RELEASE_3_14
git_last_commit: bb66d91
git_last_commit_date: 2021-10-26
Date/Publication: 2021-10-26
NeedsCompilation: no
Packaged: 2021-10-26 22:55:44 UTC; biocbuild
Author: Davide Corso [aut, cre] (<https://orcid.org/0000-0001-8845-3693>),
  Milan Malfait [aut] (<https://orcid.org/0000-0001-9144-3701>),
  Lambda Moses [aut] (<https://orcid.org/0000-0002-7092-9427>)
Maintainer: Davide Corso <davide.corso.2@phd.unipd.it>
Built: R 4.1.1; ; 2021-11-09 21:42:11 UTC; unix
