# R wrapper for SpatialDE

## Documentation for package ‘spatialDE’ version 1.0.0

- DESCRIPTION file.
- User guides, package vignettes and other documentation.

## Help Pages

.importPyModule | Import SpatialDE
FSV_sig | Plot Fraction Spatial Variance vs Q-value
MOB_sample_info | Mouse Olfactory Bulb sample metadata
mockSVG | Generate count matrix for spatially variable genes.
modelSearch | Classify Spatially Variable Genes to interpretable fitting classes
modelSearch-method | Classify Spatially Variable Genes to interpretable fitting classes
model_search | Compare model fits with different models
multiGenePlots | Plot Spatial Patterns of Multiple Genes
multiGenePlots-method | Plot Spatial Patterns of Multiple Genes
regress_out | Regress out library size effect
Rep11_MOB_0 | Mouse Olfactory Bulb spatial gene expression data
run | Perform SpatialDE test
spatialDE | Find spatially variable genes with *SpatialDE*
spatialDE-method | Find spatially variable genes with *SpatialDE*
spatialPatterns | Automatic expression histology in *SpatialDE*
spatialPatterns-method | Automatic expression histology in *SpatialDE*
spatial_patterns | Group spatially variable genes into spatial patterns using automatic expression histology (AEH)
stabilize | Stabilize variance of counts