# This file created by conda-build 3.21.4
# meta.yaml template originally from:
# /opt/recipe, last modified Tue Mar 30 12:43:27 2021
# ------------------------------------------------

package:
  name: bioconductor-soggi
  version: 1.22.0
source:
  md5: eb040003885210da3ea377cdd1b1a36c
  url:
    - https://bioarchive.galaxyproject.org/soGGi_1.22.0.tar.gz
    - https://bioconductor.org/packages/3.12/bioc/src/contrib/soGGi_1.22.0.tar.gz
    - https://depot.galaxyproject.org/software/bioconductor-soggi/bioconductor-soggi_1.22.0_src_all.tar.gz
build:
  noarch: generic
  number: '1'
  rpaths:
    - lib/
    - lib/R/lib/
  string: r40hdfd78af_1
requirements:
  host:
    - _libgcc_mutex 0.1 conda_forge
    - _openmp_mutex 4.5 1_gnu
    - _r-mutex 1.0.1 anacondar_1
    - binutils_impl_linux-64 2.35.1 h193b22a_2
    - binutils_linux-64 2.35 h67ddf6f_30
    - bioconductor-biobase 2.50.0 r40hd029910_1
    - bioconductor-biocgenerics 0.36.0 r40hdfd78af_1
    - bioconductor-biocparallel 1.24.1 r40h399db7b_0
    - bioconductor-biostrings 2.58.0 r40hd029910_1
    - bioconductor-chipseq 1.40.0 r40h037d062_0
    - bioconductor-delayedarray 0.16.3 r40hd029910_0
    - bioconductor-genomeinfodb 1.26.4 r40hdfd78af_0
    - bioconductor-genomeinfodbdata 1.2.4 r40hdfd78af_1
    - bioconductor-genomicalignments 1.26.0 r40hd029910_1
    - bioconductor-genomicranges 1.42.0 r40hd029910_1
    - bioconductor-iranges 2.24.1 r40hd029910_0
    - bioconductor-matrixgenerics 1.2.1 r40hdfd78af_0
    - bioconductor-preprocesscore 1.52.1 r40hd029910_0
    - bioconductor-rhtslib 1.22.0 r40hd029910_1
    - bioconductor-rsamtools 2.6.0 r40h399db7b_1
    - bioconductor-rtracklayer 1.50.0 r40h9bb0e53_1
    - bioconductor-s4vectors 0.28.1 r40hd029910_0
    - bioconductor-shortread 1.48.0 r40h5f743cb_0
    - bioconductor-summarizedexperiment 1.20.0 r40hdfd78af_1
    - bioconductor-xvector 0.30.0 r40hd029910_1
    - bioconductor-zlibbioc 1.36.0 r40hd029910_1
    - bwidget 1.9.14 ha770c72_0
    - bzip2 1.0.8 h7f98852_4
    - c-ares 1.17.1 h7f98852_1
    - ca-certificates 2020.12.5 ha878542_0
    - cairo 1.16.0 h6cf1ce9_1008
    - curl 7.75.0 h979ede3_0
    - fontconfig 2.13.1 hba837de_1004
    - freetype 2.10.4 h0708190_1
    - fribidi 1.0.10 h36c2ea0_0
    - gcc_impl_linux-64 9.3.0 h70c0ae5_18
    - gcc_linux-64 9.3.0 hf25ea35_30
    - gettext 0.19.8.1 h0b5b191_1005
    - gfortran_impl_linux-64 9.3.0 hc4a2995_18
    - gfortran_linux-64 9.3.0 hdc58fab_30
    - graphite2 1.3.13 h58526e2_1001
    - gsl 2.6 he838d99_2
    - gxx_impl_linux-64 9.3.0 hd87eabc_18
    - gxx_linux-64 9.3.0 h3fbe746_30
    - harfbuzz 2.8.0 h83ec7ef_1
    - icu 68.1 h58526e2_0
    - jpeg 9d h36c2ea0_0
    - kernel-headers_linux-64 2.6.32 h77966d4_13
    - krb5 1.17.2 h926e7f8_0
    - ld_impl_linux-64 2.35.1 hea4e1c9_2
    - libblas 3.9.0 8_openblas
    - libcblas 3.9.0 8_openblas
    - libcurl 7.75.0 hc4aaa36_0
    - libedit 3.1.20191231 he28a2e2_2
    - libev 4.33 h516909a_1
    - libffi 3.3 h58526e2_2
    - libgcc-devel_linux-64 9.3.0 h7864c58_18
    - libgcc-ng 9.3.0 h2828fa1_18
    - libgfortran-ng 9.3.0 hff62375_18
    - libgfortran5 9.3.0 hff62375_18
    - libglib 2.68.0 h3e27bee_2
    - libgomp 9.3.0 h2828fa1_18
    - libiconv 1.16 h516909a_0
    - liblapack 3.9.0 8_openblas
    - libnghttp2 1.43.0 h812cca2_0
    - libopenblas 0.3.12 pthreads_h4812303_1
    - libpng 1.6.37 h21135ba_2
    - libssh2 1.9.0 ha56f1ee_6
    - libstdcxx-devel_linux-64 9.3.0 hb016644_18
    - libstdcxx-ng 9.3.0 h6de172a_18
    - libtiff 4.2.0 hdc55705_0
    - libuuid 2.32.1 h7f98852_1000
    - libwebp-base 1.2.0 h7f98852_2
    - libxcb 1.13 h7f98852_1003
    - libxml2 2.9.10 h72842e0_3
    - lz4-c 1.9.3 h9c3ff4c_0
    - make 4.3 hd18ef5c_1
    - ncurses 6.2 h58526e2_4
    - openssl 1.1.1k h7f98852_0
    - pango 1.48.4 hb8ff022_0
    - pcre 8.44 he1b5a44_0
    - pcre2 10.36 h032f7d1_1
    - pixman 0.40.0 h36c2ea0_0
    - pthread-stubs 0.4 h36c2ea0_1001
    - r-assertthat 0.2.1 r40h6115d3f_2
    - r-backports 1.2.1 r40hcfec24a_0
    - r-base 4.0.3 h349a78a_8
    - r-bh 1.75.0_0 r40hc72bb7e_0
    - r-bitops 1.0_6 r40hcdcec82_1004
    - r-brio 1.1.1 r40hcfec24a_0
    - r-callr 3.6.0 r40hc72bb7e_0
    - r-cli 2.3.1 r40hc72bb7e_0
    - r-colorspace 2.0_0 r40h9e2df91_0
    - r-crayon 1.4.1 r40hc72bb7e_0
    - r-desc 1.3.0 r40hc72bb7e_0
    - r-diffobj 0.3.3 r40hcfec24a_0
    - r-digest 0.6.27 r40h1b71b39_0
    - r-ellipsis 0.3.1 r40hcdcec82_0
    - r-evaluate 0.14 r40h6115d3f_2
    - r-fansi 0.4.2 r40hcfec24a_0
    - r-farver 2.1.0 r40h03ef668_0
    - r-formatr 1.8 r40hc72bb7e_0
    - r-futile.logger 1.4.3 r40h6115d3f_1003
    - r-futile.options 1.0.1 r40h6115d3f_1002
    - r-ggplot2 3.3.3 r40hc72bb7e_0
    - r-glue 1.4.2 r40hcfec24a_0
    - r-gtable 0.3.0 r40h6115d3f_3
    - r-hwriter 1.3.2 r40h6115d3f_1003
    - r-isoband 0.2.4 r40h03ef668_0
    - r-jpeg 0.1_8.1 r40hcdcec82_1
    - r-jsonlite 1.7.2 r40hcfec24a_0
    - r-labeling 0.4.2 r40h142f84f_0
    - r-lambda.r 1.2.4 r40h6115d3f_1
    - r-lattice 0.20_41 r40hcfec24a_3
    - r-latticeextra 0.6_29 r40h6115d3f_1
    - r-lifecycle 1.0.0 r40hc72bb7e_0
    - r-magrittr 2.0.1 r40hcfec24a_1
    - r-mass 7.3_53.1 r40hcfec24a_0
    - r-matrix 1.3_2 r40he454529_0
    - r-matrixstats 0.58.0 r40hcfec24a_0
    - r-mgcv 1.8_34 r40he454529_0
    - r-munsell 0.5.0 r40h6115d3f_1003
    - r-nlme 3.1_152 r40h859d828_0
    - r-pillar 1.5.1 r40hc72bb7e_0
    - r-pkgbuild 1.2.0 r40hc72bb7e_0
    - r-pkgconfig 2.0.3 r40h6115d3f_1
    - r-pkgload 1.2.0 r40h03ef668_0
    - r-plyr 1.8.6 r40h0357c0b_1
    - r-png 0.1_7 r40hcdcec82_1004
    - r-praise 1.0.0 r40h6115d3f_1004
    - r-prettyunits 1.1.1 r40h6115d3f_1
    - r-processx 3.5.0 r40hcfec24a_0
    - r-ps 1.6.0 r40hcfec24a_0
    - r-r6 2.5.0 r40hc72bb7e_0
    - r-rcolorbrewer 1.1_2 r40h6115d3f_1003
    - r-rcpp 1.0.6 r40h03ef668_0
    - r-rcurl 1.98_1.3 r40hcfec24a_0
    - r-rematch2 2.1.2 r40h6115d3f_1
    - r-reshape2 1.4.4 r40h0357c0b_1
    - r-rlang 0.4.10 r40hcfec24a_0
    - r-rprojroot 2.0.2 r40hc72bb7e_0
    - r-rstudioapi 0.13 r40hc72bb7e_0
    - r-scales 1.1.1 r40h6115d3f_0
    - r-snow 0.4_3 r40h6115d3f_1002
    - r-stringi 1.5.3 r40hcabe038_1
    - r-stringr 1.4.0 r40h6115d3f_2
    - r-testthat 3.0.2 r40h03ef668_0
    - r-tibble 3.1.0 r40hcfec24a_1
    - r-utf8 1.2.1 r40hcfec24a_0
    - r-vctrs 0.3.7 r40hcfec24a_0
    - r-viridislite 0.3.0 r40h6115d3f_1003
    - r-waldo 0.2.5 r40hc72bb7e_0
    - r-withr 2.4.1 r40hc72bb7e_0
    - r-xml 3.99_0.6 r40hcfec24a_0
    - r-zeallot 0.1.0 r40h6115d3f_1002
    - readline 8.0 he28a2e2_2
    - sed 4.8 he412f7d_0
    - sysroot_linux-64 2.12 h77966d4_13
    - tk 8.6.10 h21135ba_1
    - tktable 2.10 hb7b940f_3
    - xorg-kbproto 1.0.7 h7f98852_1002
    - xorg-libice 1.0.10 h7f98852_0
    - xorg-libsm 1.2.3 hd9c2040_1000
    - xorg-libx11 1.7.0 h7f98852_0
    - xorg-libxau 1.0.9 h7f98852_0
    - xorg-libxdmcp 1.1.3 h7f98852_0
    - xorg-libxext 1.3.4 h7f98852_1
    - xorg-libxrender 0.9.10 h7f98852_1003
    - xorg-libxt 1.2.1 h7f98852_2
    - xorg-renderproto 0.11.1 h7f98852_1002
    - xorg-xextproto 7.3.0 h7f98852_1002
    - xorg-xproto 7.0.31 h7f98852_1007
    - xz 5.2.5 h516909a_1
    - zlib 1.2.11 h516909a_1010
    - zstd 1.4.9 ha95c52a_0
  run:
    - bioconductor-biocgenerics >=0.36.0,<0.37.0
    - bioconductor-biocparallel >=1.24.0,<1.25.0
    - bioconductor-biostrings >=2.58.0,<2.59.0
    - bioconductor-chipseq >=1.40.0,<1.41.0
    - bioconductor-genomeinfodb >=1.26.0,<1.27.0
    - bioconductor-genomicalignments >=1.26.0,<1.27.0
    - bioconductor-genomicranges >=1.42.0,<1.43.0
    - bioconductor-iranges >=2.24.0,<2.25.0
    - bioconductor-preprocesscore >=1.52.0,<1.53.0
    - bioconductor-rsamtools >=2.6.0,<2.7.0
    - bioconductor-rtracklayer >=1.50.0,<1.51.0
    - bioconductor-s4vectors >=0.28.0,<0.29.0
    - bioconductor-summarizedexperiment >=1.20.0,<1.21.0
    - r-base >=4.0,<4.1.0a0
    - r-ggplot2
    - r-reshape2
test:
  commands:
    - $R -e "library('soGGi')"
about:
  description: The soGGi package provides a toolset to create genomic interval aggregate/summary
    plots of signal or motif occurence from BAM and bigWig files as well as PWM, rlelist,
    GRanges and GAlignments Bioconductor objects. soGGi allows for normalisation,
    transformation and arithmetic operation on and between summary plot objects as
    well as grouping and subsetting of plots by GRanges objects and user supplied
    metadata. Plots are created using the GGplot2 libary to allow user defined manipulation
    of the returned plot object. Coupled together, soGGi features a broad set of methods
    to visualise genomics data in the context of groups of genomic intervals such
    as genes, superenhancers and transcription factor binding events.
  home: https://bioconductor.org/packages/3.12/bioc/html/soGGi.html
  license: GPL (>= 3)
  license_file: /opt/conda/conda-bld/bioconductor-soggi_1617121042710/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_plac/lib/R/share/licenses/GPL-3
  summary: Visualise ChIP-seq, MNase-seq and motif occurrence as aggregate plots Summarised
    Over Grouped Genomic Intervals
extra:
  copy_test_source_files: true
  final: true
  identifiers:
    - biotools:soggi
    - doi:10.1038/nmeth.3252
