# Generated by roxygen2 (4.0.1): do not edit by hand

export(findconsensusRegions)
export(groupByOverlaps)
export(makeMotifScoreRle)
export(normalise.ChIPprofile)
export(normaliseQuantiles.ChIPprofile)
export(orientBy)
export(pwmToCoverage)
export(regionPlot)
export(summitPipeline)
exportClasses(ChIPprofile)
exportMethods("$")
exportMethods("[[")
exportMethods(Ops)
exportMethods(c)
exportMethods(cbind)
exportMethods(log)
exportMethods(log2)
exportMethods(mean)
exportMethods(normalise)
exportMethods(normaliseQuantiles)
exportMethods(plotRegion)
exportMethods(rbind)
importFrom(ggplot2, aes_string)
importFrom(ggplot2, element_text)
importFrom(ggplot2, facet_wrap)
importFrom(ggplot2, geom_path)
importFrom(ggplot2, ggplot)
importFrom(ggplot2, ggsave)
importFrom(ggplot2, scale_x_continuous)
importFrom(ggplot2, theme)
importFrom(ggplot2, xlim)
importFrom(ggplot2, ylab)
import(methods)
import(reshape2)
import(BiocGenerics)
import(S4Vectors)
import(IRanges)
import(GenomeInfoDb)
import(GenomicRanges)
import(SummarizedExperiment)
import(Biostrings)
import(Rsamtools)
import(GenomicAlignments)
import(rtracklayer)
import(preprocessCore)
import(chipseq)
import(BiocParallel)
