SMITE-package	SMITE-package
addShadowText	addShadowText
addShadowText,ANY-method	addShadowText
annotateExpression	annotateExpression
annotateExpression,PvalueAnnotation-method	annotateExpression
annotateModification	annotateModification
annotateModification,PvalueAnnotation-method	annotateModification
convertGeneIds	convertGeneIds
convertGeneIds,character,character,character-method	convertGeneIds
curated_expressiondata	curated_expression
expression_curated	curated_expression
extractExpression	extractExpression
extractExpression,PvalueAnnotation-method	extractExpression
extractGOseq	extractGOseq
extractGOseq,PvalueAnnotation-method	extractGOseq
extractModification	extractModification
extractModification,PvalueAnnotation-method	extractModification
extractModSummary	extractModification
extractModSummary,PvalueAnnotation-method	extractModification
extractModules	extractModules
extractModules,PvalueAnnotation-method	extractModules
extractScores	extractScores
extractScores,PvalueAnnotation-method	extractScores
genes	genes_for_conversiontest
genes_for_conversiontest	genes_for_conversiontest
h3k4me1	histone_h3k4me1
hg19_genes	hg19_gene_bed
hg19_genes_bed	hg19_gene_bed
highScores	highScores
highScores,PvalueAnnotation-method	highScores
histone_h3k4me1	histone_h3k4me1
makePvalueAnnotation	makePvalueAnnotation
makePvalueAnnotation,ANY-method	makePvalueAnnotation
makePvalueObject	makePvalueObject
makePvalueObject,PvalueAnnotation-method	makePvalueObject
methylation	methylationdata
methylationdata	methylationdata
normalizePval	normalizePval
normalizePval,PvalueAnnotation-method	normalizePval
plotCompareScores	plotCompareScores
plotCompareScores,PvalueAnnotation-method	plotCompareScores
plotDensityPval	plotDensityPval
plotDensityPval,PvalueAnnotation-method	plotDensityPval
plotModule	plotModule
plotModule,PvalueAnnotation-method	plotModule
REACTOME	Reactome.Symbol.Igraph
Reactome.Symbol.Igraph	Reactome.Symbol.Igraph
removeModification	removeModification
removeModification,PvalueAnnotation-method	removeModification
runBioNet	runBioNet
runBioNet,PvalueAnnotation-method	runBioNet
runGOseq	runGOseq
runGOseq,PvalueAnnotation-method	runGOseq
runSpinglass	runSpinglass
runSpinglass,PvalueAnnotation-method	runSpinglass
scorePval	scorePval
scorePval,PvalueAnnotation-method	scorePval
searchGOseq	extractGOseq
searchGOseq,PvalueAnnotation-method	extractGOseq
SMITE	SMITE-package
stoufferTest	stoufferTest
stoufferTest,vector-method	stoufferTest
test_annotation	test_annotation_score_data
test_annotation_score_data	test_annotation_score_data
