Package: slinky
Type: Package
Title: Putting the fun in LINCS L1000 data analysis
Version: 1.12.0
Date: 2021-08-16
Authors@R: person("Eric", "Kort", email = "eric.kort@vai.org",role = c("aut", "cre"))
Description: Wrappers to query the L1000 metadata available via the clue.io 
    REST API as well as helpers for dealing with LINCS gctx files, extracting 
    data sets of interest, converting to SummarizedExperiment objects, and 
    some facilities for performing streamlined differential expression 
    analysis of these data sets.
License: MIT + file LICENSE
Encoding: UTF-8
Depends: R (>= 4.1)
Imports: SummarizedExperiment, curl, dplyr, foreach, httr, stats,
        utils, methods, readr, rhdf5, jsonlite, tidyr
Collate: 'slinky.R' 'slinky_clue.R' 'slinky_sumexp.R'
        'slinky_download.R' 'slinky_info.R' 'slinky_gctx.R'
        'slinky_scoring.R' 'slinky_chdir.R' 'slinky_ks.R' 'zzz.R'
Suggests: GeoDE, doParallel, testthat, knitr, rmarkdown, ggplot2,
        Rtsne, Biobase, BiocStyle
VignetteBuilder: knitr
RoxygenNote: 6.1.1
biocViews: DataImport, ThirdPartyClient, GeneExpression,
        DifferentialExpression, GeneSetEnrichment, PatternLogic
PackageStatus: Deprecated
git_url: https://git.bioconductor.org/packages/slinky
git_branch: RELEASE_3_14
git_last_commit: b7c2f83
git_last_commit_date: 2021-10-26
Date/Publication: 2021-10-26
NeedsCompilation: no
Packaged: 2021-10-26 22:51:26 UTC; biocbuild
Author: Eric Kort [aut, cre]
Maintainer: Eric Kort <eric.kort@vai.org>
Built: R 4.1.1; ; 2021-11-03 15:19:08 UTC; unix
