Package: singleCellTK
Type: Package
Title: Comprehensive and Interactive Analysis of Single Cell RNA-Seq
        Data
Version: 2.0.0
Authors@R: c(person(given="David", family="Jenkins", email="dfj@bu.edu", role=c("aut"),
                    comment = c(ORCID = "0000-0002-7451-4288")),
             person(given="Vidya", family="Akavoor", email="vidyaap@bu.edu", role=c("aut")),
             person(given="Salam", family="Alabdullatif", email="salamha@bu.edu", role=c("aut")),
             person(given="Shruthi", family="Bandyadka", email="sbandya@bu.edu", role=c("aut")),
             person(given="Emma", family="Briars", email="ebriars@bu.edu", role=c("aut"),
                    comment = c(ORCID = "0000-0001-9350-5523")),
             person(given="Xinyun", family="Cao", email="xcao19@bu.edu", role=c("aut")),
             person(given="Sebastian", family="Carrasco Pro", email="abild@coh.org", role=c("aut")),
             person(given="Tyler", family="Faits", email="tfaits@bu.edu", role=c("aut")),
             person(given="Rui", family="Hong", email="rzhong@bu.edu", role=c("aut")),
             person(given=c("Mohammed", "Muzamil"), family="Khan", email="mmkhan@bu.edu", role=c("aut")),
             person(given="Yusuke", family="Koga", email="ykoga07@bu.edu", role=c("aut", "cre")),
             person(given="Anastasia", family="Leshchyk", email="aleshchk@bu.edu", role=c("aut")),
             person(given="Irzam", family="Sarfraz", email="irzam9095@gmail.com", role=c("aut")),
             person(given="Yichen", family="Wang", email="wangych@bu.edu", role=c("aut")),
             person(given="Zhe", family="Wang", email="zhe@bu.edu", role=c("aut")),
             person(given=c("W.", "Evan"), family="Johnson", email="wej@bu.edu", role=c("aut"),
                    comment = c(ORCID = "0000-0002-6247-6595")),
             person(given=c("Joshua", "David"), family="Campbell", email="camp@bu.edu", role=c("aut")))
Depends: R (>= 4.0), SummarizedExperiment, SingleCellExperiment,
        DelayedArray, Biobase
Description: Run common single cell analysis in the R console or directly through your browser. Includes many functions for import, quality control, normalization, batch correction, clustering, differential expression, and visualization..
License: MIT + file LICENSE
Encoding: UTF-8
biocViews: SingleCell, GeneExpression, DifferentialExpression,
        Alignment, Clustering, ImmunoOncology
LazyData: TRUE
Imports: ape, batchelor, BiocGenerics, BiocParallel, colourpicker,
        colorspace, cowplot, cluster, ComplexHeatmap, data.table,
        DelayedMatrixStats, DESeq2, dplyr, DT, ExperimentHub, fields,
        ggplot2, ggplotify, ggrepel, ggtree, gridExtra, GSVA (>=
        1.26.0), GSVAdata, igraph, KernSmooth, limma, MAST, Matrix,
        matrixStats, methods, msigdbr, multtest, plotly, RColorBrewer,
        ROCR, Rtsne, S4Vectors, scater, scMerge (>= 1.2.0), scran,
        Seurat (>= 3.1.3), shiny, shinyFiles, shinyWidgets, shinyjs,
        shinyBS, shinyjqui, sva, reshape2, AnnotationDbi, shinyalert,
        circlize, enrichR, celda, shinycssloaders, shinythemes, uwot,
        DropletUtils, scds (>= 1.2.0), reticulate (>= 1.14), tools,
        withr, GSEABase, R.utils, zinbwave, scRNAseq (>= 2.0.2),
        TENxPBMCData, yaml, rmarkdown, magrittr, kableExtra,
        scDblFinder
RoxygenNote: 7.1.1
Suggests: testthat, Rsubread, BiocStyle, knitr, lintr, bladderbatch,
        xtable, spelling, org.Mm.eg.db, stringr
VignetteBuilder: knitr
URL: https://compbiomed.github.io/sctk_docs/
BugReports: https://github.com/compbiomed/singleCellTK/issues
Language: en-US
git_url: https://git.bioconductor.org/packages/singleCellTK
git_branch: RELEASE_3_12
git_last_commit: e97b135
git_last_commit_date: 2020-10-27
Date/Publication: 2020-10-27
NeedsCompilation: no
Packaged: 2020-10-28 03:35:46 UTC; biocbuild
Author: David Jenkins [aut] (<https://orcid.org/0000-0002-7451-4288>),
  Vidya Akavoor [aut],
  Salam Alabdullatif [aut],
  Shruthi Bandyadka [aut],
  Emma Briars [aut] (<https://orcid.org/0000-0001-9350-5523>),
  Xinyun Cao [aut],
  Sebastian Carrasco Pro [aut],
  Tyler Faits [aut],
  Rui Hong [aut],
  Mohammed Muzamil Khan [aut],
  Yusuke Koga [aut, cre],
  Anastasia Leshchyk [aut],
  Irzam Sarfraz [aut],
  Yichen Wang [aut],
  Zhe Wang [aut],
  W. Evan Johnson [aut] (<https://orcid.org/0000-0002-6247-6595>),
  Joshua David Campbell [aut]
Maintainer: Yusuke Koga <ykoga07@bu.edu>
Built: R 4.0.3; ; 2020-11-03 08:44:17 UTC; unix
