$,LinearEmbeddingMatrix-method	LEM-getset
$<-,LinearEmbeddingMatrix-method	LEM-getset
%	altExps
altExp	altExps
altExp,SingleCellExperiment,character-method	altExps
altExp,SingleCellExperiment,missing-method	altExps
altExp,SingleCellExperiment,numeric-method	altExps
altExp<-	altExps
altExp<-,SingleCellExperiment,character-method	altExps
altExp<-,SingleCellExperiment,missing-method	altExps
altExp<-,SingleCellExperiment,numeric-method	altExps
altExpNames	altExps
altExpNames,SingleCellExperiment-method	altExps
altExpNames<-	altExps
altExpNames<-,SingleCellExperiment,character-method	altExps
altExps	altExps
altExps,SingleCellExperiment-method	altExps
altExps<-	altExps
altExps<-,SingleCellExperiment-method	altExps
as.matrix,LinearEmbeddingMatrix-method	LEM-getset
c,SummarizedExperimentByColumn-method	altExps
cbind,LinearEmbeddingMatrix-method	LEM-combine
cbind,SingleCellExperiment-method	combine
check	altExps
clearSizeFactors	SCE-sizeFactors
clearSizeFactors,SingleCellExperiment-method	SCE-sizeFactors
clearSpikes	SCE-isSpike
clearSpikes,SingleCellExperiment-method	SCE-isSpike
coerce,RangedSummarizedExperiment,SingleCellExperiment-method	SingleCellExperiment
coerce,SummarizedExperiment,SingleCellExperiment-method	SingleCellExperiment
colData,SingleCellExperiment-method	internals
complain.	altExps
counts	assays
counts,SingleCellExperiment-method	assays
counts<-	assays
counts<-,SingleCellExperiment-method	assays
cpm	assays
cpm,SingleCellExperiment-method	assays
cpm<-	assays
cpm<-,SingleCellExperiment-method	assays
dim,LinearEmbeddingMatrix-method	LEM-getset
dimnames,LinearEmbeddingMatrix-method	LEM-getset
dimnames<-,LinearEmbeddingMatrix,ANY-method	LEM-getset
dimnames<-,LinearEmbeddingMatrix-method	LEM-getset
doesn't	altExps
Dumping	altExps
factorData	LEM-getset
factorData,LinearEmbeddingMatrix-method	LEM-getset
factorData<-	LEM-getset
factorData<-,LinearEmbeddingMatrix-method	LEM-getset
featureLoadings	LEM-getset
featureLoadings,LinearEmbeddingMatrix-method	LEM-getset
featureLoadings<-	LEM-getset
featureLoadings<-,LinearEmbeddingMatrix-method	LEM-getset
here,	altExps
int_colData	internals
int_colData,SingleCellExperiment-method	internals
int_colData<-	internals
int_colData<-,SingleCellExperiment-method	internals
int_elementMetadata	internals
int_elementMetadata,SingleCellExperiment-method	internals
int_elementMetadata<-	internals
int_elementMetadata<-,SingleCellExperiment-method	internals
int_metadata	internals
int_metadata,SingleCellExperiment-method	internals
int_metadata<-	internals
int_metadata<-,SingleCellExperiment-method	internals
isSpike	SCE-isSpike
isSpike,SingleCellExperiment,character-method	SCE-isSpike
isSpike,SingleCellExperiment,missing-method	SCE-isSpike
isSpike,SingleCellExperiment,NULL-method	SCE-isSpike
isSpike<-	SCE-isSpike
isSpike<-,SingleCellExperiment,character-method	SCE-isSpike
length,SummarizedExperimentByColumn-method	altExps
LinearEmbeddingMatrix	LinearEmbeddingMatrix
LinearEmbeddingMatrix-class	LinearEmbeddingMatrix
logcounts	assays
logcounts,SingleCellExperiment-method	assays
logcounts<-	assays
logcounts<-,SingleCellExperiment-method	assays
methods	altExps
names,SummarizedExperimentByColumn-method	altExps
names<-,SummarizedExperimentByColumn-method	altExps
normcounts	assays
normcounts,SingleCellExperiment-method	assays
normcounts<-	assays
normcounts<-,SingleCellExperiment-method	assays
objectVersion	miscellaneous
objectVersion,SingleCellExperiment-method	miscellaneous
rbind,LinearEmbeddingMatrix-method	LEM-combine
rbind,SingleCellExperiment-method	combine
reducedDim	reducedDims
reducedDim,SingleCellExperiment,character-method	reducedDims
reducedDim,SingleCellExperiment,missing-method	reducedDims
reducedDim,SingleCellExperiment,numeric-method	reducedDims
reducedDim<-	reducedDims
reducedDim<-,SingleCellExperiment,character-method	reducedDims
reducedDim<-,SingleCellExperiment,missing-method	reducedDims
reducedDim<-,SingleCellExperiment,numeric-method	reducedDims
reducedDimNames	reducedDims
reducedDimNames,SingleCellExperiment-method	reducedDims
reducedDimNames<-	reducedDims
reducedDimNames<-,SingleCellExperiment,character-method	reducedDims
reducedDims	reducedDims
reducedDims,SingleCellExperiment-method	reducedDims
reducedDims<-	reducedDims
reducedDims<-,SingleCellExperiment-method	reducedDims
removeAltExps	altExps
rowData,SingleCellExperiment-method	internals
sampleFactors	LEM-getset
sampleFactors,LinearEmbeddingMatrix-method	LEM-getset
sampleFactors<-	LEM-getset
sampleFactors<-,LinearEmbeddingMatrix-method	LEM-getset
SCE-assays	assays
SCE-combine	combine
SCE-internals	internals
SCE-miscellaneous	miscellaneous
SEBC	altExps
show,LinearEmbeddingMatrix-method	LEM-misc
show,SingleCellExperiment-method	miscellaneous
SingleCellExperiment	SingleCellExperiment
SingleCellExperiment-class	SingleCellExperiment
sizeFactorNames	SCE-sizeFactors
sizeFactorNames,SingleCellExperiment-method	SCE-sizeFactors
sizeFactors	SCE-sizeFactors
sizeFactors,SingleCellExperiment-method	SCE-sizeFactors
sizeFactors<-,SingleCellExperiment-method	SCE-sizeFactors
so	altExps
spikeNames	SCE-isSpike
spikeNames,SingleCellExperiment-method	SCE-isSpike
splitAltExps	splitAltExps
swapAltExp	swapAltExp
that	altExps
the	altExps
tpm	assays
tpm,SingleCellExperiment-method	assays
tpm<-	assays
tpm<-,SingleCellExperiment-method	assays
updateObject	updateObject
updateObject,SingleCellExperiment-method	updateObject
weights	assays
weights,SingleCellExperiment-method	assays
weights<-	assays
weights<-,SingleCellExperiment-method	assays
[,LinearEmbeddingMatrix,ANY,ANY,ANY-method	LEM-subset
[,LinearEmbeddingMatrix,ANY,ANY-method	LEM-subset
[,LinearEmbeddingMatrix,ANY-method	LEM-subset
[,SingleCellExperiment,ANY,ANY,ANY-method	combine
[,SingleCellExperiment,ANY,ANY-method	combine
[,SingleCellExperiment,ANY-method	combine
[,SummarizedExperimentByColumn,ANY,ANY,ANY-method	altExps
[<-,LinearEmbeddingMatrix,ANY,ANY,LinearEmbeddingMatrix-method	LEM-subset
[<-,SingleCellExperiment,ANY,ANY,SingleCellExperiment-method	combine
[<-,SummarizedExperimentByColumn,ANY,ANY,ANY-method	altExps
