Package: simplifyEnrichment
Type: Package
Title: Simplify Functional Enrichment Results
Version: 1.0.0
Date: 2020-10-07
Author: Zuguang Gu
Maintainer: Zuguang Gu <z.gu@dkfz.de>
Depends: R (>= 3.6.0), BiocGenerics, grid
Imports: GOSemSim, ComplexHeatmap (>= 2.5.4), circlize, GetoptLong,
        digest, tm, GO.db, org.Hs.eg.db, AnnotationDbi, slam, methods,
        clue, grDevices, graphics, stats, utils, proxyC, Matrix,
        cluster (>= 1.14.2)
Suggests: knitr, ggplot2, cowplot, mclust, apcluster, MCL, dbscan,
        igraph, gridExtra, dynamicTreeCut, testthat, gridGraphics,
        clusterProfiler, msigdbr, DOSE, DO.db, reactome.db, flexclust,
        BiocManager
Description: A new method (binary cut) is proposed to effectively cluster 
         GO terms into groups from the semantic similarity matrix.
         Summaries of GO terms in each cluster are visualized by word clouds.
biocViews: Software, Visualization, GO, Clustering, GeneSetEnrichment
URL: https://github.com/jokergoo/simplifyEnrichment,
        https://simplifyEnrichment.github.io
VignetteBuilder: knitr
License: MIT + file LICENSE
git_url: https://git.bioconductor.org/packages/simplifyEnrichment
git_branch: RELEASE_3_12
git_last_commit: 8e81880
git_last_commit_date: 2020-10-27
Date/Publication: 2020-10-27
NeedsCompilation: no
Packaged: 2020-10-28 03:35:05 UTC; biocbuild
Built: R 4.0.3; ; 2020-11-01 23:24:18 UTC; unix
