# Implementations of transcriptional cancer signatures

## Documentation for package ‘signifinder’ version 1.4.0

- DESCRIPTION file.
- User guides, package vignettes and other documentation.
- Package NEWS.

## Help Pages

ASCSign | Adult Stem Cell Signature
autophagySign | Autophagy Signature
availableSignatures | Show Available Signatures
cellCycleSign | Cell-cycle Signature classifier
chemokineSign | Chemokine Signature
CINSign | Chromosomal instability Signature
CISSign | CIS (carcinoma-in situ) Signature
consensusOVSign | ConsensusOV Signature
correlationSignPlot | Correlation Plot
DNArepSign | DNA Repair Signature
ECMSign | Extracellular Matrix Signature
EMTSign | Epithelial-Mesenchymal Transition Signature
evaluationSignPlot | Evaluation Plot
expandedImmuneSign | ExpandedImmune Signature
ferroptosisSign | Ferroptosis Signature
geneHeatmapSignPlot | Genes' Signatures' Heatmap
glioCellStateSign | Glioblastoma Cellular States Signature
glycolysisSign | Glycolysis Signature
heatmapSignPlot | Global Heatmap of Signatures' scores.
HRDSSign | Homologous Recombination Deficiency Signature
hypoxiaSign | Hypoxia Signature
IFNSign | IFN-gamma Signature
immuneCytSign | Immune Cytolytic Activity Signature
immunoScoreSign | Immunogenic Signature
IPRESSign | IPRES Signature
IPSOVSign | IPSOV Signature
IPSSign | ImmunoPhenoScore Signature
ISCSign | Adult Intestinal Stem Cell Signature
lipidMetabolismSign | Lipid Metabolism Signature
matrisomeSign | Core Matrisome Gene signature
mitoticIndexSign | Mitotic Index
multipleSign | Multiple Signatures Computation
oneSignPlot | Scatterplot for a single signature
ovse | Example expression data.
PassONSign | passON Signature
pyroptosisSign | Pyroptosis Signature
ridgelineSignPlot | Ridgeline Plot
stemCellCD49fSign | CD49fHi Basal Stem Cell Signature
survivalSignPlot | Survival Plot
TinflamSign | TinflamSign Signature
TLSSign | Tertiary Lymphoid Structures (TLS) Signature
VEGFSign | VEGF Signature