Package: signifinder
Type: Package
Title: Implementations of transcriptional cancer signatures
Version: 1.2.1
Authors@R: c(person("Stefania", "Pirrotta", role = c("cre", "aut"),
                    email = "stefania.pirrotta@phd.unipd.it",
                    comment = c(ORCID = "0009-0004-0030-217X")),
             person("Enrica", "Calura", role = "aut", 
                    email = "enrica.calura@unipd.it",
                    comment = c(ORCID = "0000-0001-8463-2432")))
Description: signifinder is an R package for computing and exploring a 
            compendium of tumor signatures. It allows to compute a variety of
            signatures, based on gene expression values, and return
            single-sample scores. Currently, signifinder contains 46 distinct 
            signatures collected from the literature, relating to multiple 
            tumors and multiple cancer processes.
License: AGPL-3
biocViews: GeneExpression, GeneTarget, ImmunoOncology,
        BiomedicalInformatics, RNASeq, Microarray, ReportWriting,
        Visualization, SingleCell, Spatial
Imports: ggplot2, org.Hs.eg.db, patchwork, AnnotationDbi, BiocGenerics,
        ComplexHeatmap, cowplot, DGEobj.utils, GSVA, IRanges,
        SummarizedExperiment, consensusOV, dplyr, ensembldb, ggridges,
        grid, magrittr, matrixStats, maxstat, methods, openair,
        RColorBrewer, TxDb.Hsapiens.UCSC.hg19.knownGene,
        TxDb.Hsapiens.UCSC.hg38.knownGene, stats, survival, survminer,
        viridis
Encoding: UTF-8
RoxygenNote: 7.2.3
Depends: R (>= 4.2.0)
LazyData: false
Suggests: BiocStyle, knitr, kableExtra, testthat (>= 3.0.0), edgeR,
        limma
Config/testthat/edition: 3
VignetteBuilder: knitr
BugReports: https://github.com/CaluraLab/signifinder/issues
URL: https://github.com/CaluraLab/signifinder
git_url: https://git.bioconductor.org/packages/signifinder
git_branch: RELEASE_3_17
git_last_commit: b29db12
git_last_commit_date: 2023-05-10
Date/Publication: 2023-05-10
NeedsCompilation: no
Packaged: 2023-05-10 22:36:18 UTC; biocbuild
Author: Stefania Pirrotta [cre, aut] (<https://orcid.org/0009-0004-0030-217X>),
  Enrica Calura [aut] (<https://orcid.org/0000-0001-8463-2432>)
Maintainer: Stefania Pirrotta <stefania.pirrotta@phd.unipd.it>
Built: R 4.3.1; ; 2023-07-18 08:26:48 UTC; unix
