Package: signifinder
Type: Package
Title: Implementations of transcriptional cancer signatures
Version: 1.0.0
Authors@R: c(person("Stefania", "Pirrotta", role = c("cre", "aut"),
                    email = "stefania.pirrotta@phd.unipd.it"),
             person("Enrica", "Calura", role = "aut", 
                    email = "enrica.calura@unipd.it"))
Description: signifinder is an R package for computing and exploring a 
            compendium of tumor signatures. It allows computing signatures
            scores providing the only gene expression values and returns a
            single-sample score. Currently, signifinder contains 46 distinct 
            signatures collected from the literature.
License: AGPL-3
biocViews: GeneExpression, GeneTarget, ImmunoOncology,
        BiomedicalInformatics, RNASeq, Microarray, ReportWriting,
        Visualization
Imports: ggplot2, org.Hs.eg.db, patchwork, AnnotationDbi, BiocGenerics,
        ComplexHeatmap, DGEobj.utils, GSVA, IRanges,
        SummarizedExperiment, consensusOV, dplyr, ensembldb, ggridges,
        grid, magrittr, matrixStats, maxstat, methods, openair,
        RColorBrewer, TxDb.Hsapiens.UCSC.hg19.knownGene,
        TxDb.Hsapiens.UCSC.hg38.knownGene, stats, survival, survminer,
        viridis
Encoding: UTF-8
RoxygenNote: 7.2.1
Depends: R (>= 4.2.0)
LazyData: false
Suggests: BiocStyle, knitr, kableExtra, testthat (>= 3.0.0), edgeR,
        limma
Config/testthat/edition: 3
VignetteBuilder: knitr
BugReports: https://github.com/CaluraLab/signifinder/issues
URL: https://github.com/CaluraLab/signifinder
git_url: https://git.bioconductor.org/packages/signifinder
git_branch: RELEASE_3_16
git_last_commit: 082a2c4
git_last_commit_date: 2022-11-01
Date/Publication: 2022-11-01
NeedsCompilation: no
Packaged: 2022-11-01 23:02:44 UTC; biocbuild
Author: Stefania Pirrotta [cre, aut],
  Enrica Calura [aut]
Maintainer: Stefania Pirrotta <stefania.pirrotta@phd.unipd.it>
Built: R 4.2.2; ; 2022-11-08 23:58:48 UTC; unix
