EBAM-class              Class EBAM
FindA0-class            Class FindA0
SAM-class               Class SAM
chisq.ebam              EBAM Analysis for Categorical Data
chisq.stat              SAM Analysis for Categorical Data
d.stat                  SAM Analysis Using a Modified t-statistic
delta.plot              Delta Plots
denspr                  Density Estimation
ebam                    Empirical Bayes Analysis of Microarrays
ebamControl             Further EBAM Arguments
find.a0                 Computation of the Fudge Factor
findDelta               Finding the Threshold Delta
fudge2                  Fudge Factor
fuzzy.ebam              EBAM and SAM for Fuzzy Genotype Calls
help.ebam               Help files or argument list for EBAM-specific
                        methods
help.finda0             Help files or argument list for FindA0-specific
                        methods
help.sam                Help files or argument list for SAM-specific
                        methods
limma2sam               limma to SAM or EBAM
link.genes              Links for a list of genes
link.siggenes           Links for a SAM or an EBAM object
list.siggenes           List of the significant genes
md.plot                 MD Plot
nclass.wand             Number of cells in a histogram
pi0.est                 Estimation of the prior probability
plotArguments           Plot Arguments
plotFindArguments       Plot Arguments
qvalue.cal              Computation of the q-value
rowWilcoxon             Rowwise Wilcoxon Rank Sum Statistics
sam                     Significance Analysis of Microarray
sam.plot2               SAM Plot
samControl              Further SAM Arguments
siggenes2excel          CSV file of a SAM or an EBAM object
siggenes2html           HTML page for a SAM or an EBAM object
sumSAM-class            Classes sumSAM and sumEBAM
trend.ebam              EBAM Analysis of Linear Trend
trend.stat              SAM Analysis of Linear Trend
wilc.ebam               EBAM Analysis Using Wilcoxon Rank Statistics
wilc.stat               SAM Analysis Using Wilcoxon Rank Statistics
z.ebam                  EBAM analysis Using t- or F-test
