seqsetvis-package	seqsetvis-package
.expand_cigar_dt	dot-expand_cigar_dt
.expand_cigar_dt_recursive	dot-expand_cigar_dt_recursive
.rm_dupes	dot-rm_dupes
.rm_dupesPE	dot-rm_dupesPE
add_cluster_annotation	add_cluster_annotation
append_ynorm	append_ynorm
applyMovingAverage	applyMovingAverage
applySpline	applySpline
assemble_heatmap_cluster_bars	assemble_heatmap_cluster_bars
Bcell_peaks	Bcell_peaks
calc_norm_factors	calc_norm_factors
centerAtMax	centerAtMax
centerFixedSizeGRanges	centerFixedSizeGRanges
centerGRangesAtMax	centerGRangesAtMax
chromHMM_demo_bw_states_gr	chromHMM_demo_bw_states_gr
chromHMM_demo_chain_url	chromHMM_demo_chain_url
chromHMM_demo_data	chromHMM_demo_data
chromHMM_demo_overlaps_gr	chromHMM_demo_overlaps_gr
chromHMM_demo_segmentation_url	chromHMM_demo_segmentation_url
chromHMM_demo_state_colors	chromHMM_demo_state_colors
chromHMM_demo_state_total_widths	chromHMM_demo_state_total_widths
clusteringKmeans	clusteringKmeans
clusteringKmeansNestedHclust	clusteringKmeansNestedHclust
col2hex	col2hex
collapse_gr	collapse_gr
convert_collapsed_coord	convert_collapsed_coord
copy_clust_info	copy_clust_info
crossCorrByRle	crossCorrByRle
CTCF_in_10a_bigWig_urls	CTCF_in_10a_bigWig_urls
CTCF_in_10a_data	CTCF_in_10a_data
CTCF_in_10a_narrowPeak_grs	CTCF_in_10a_narrowPeak_grs
CTCF_in_10a_narrowPeak_urls	CTCF_in_10a_narrowPeak_urls
CTCF_in_10a_overlaps_gr	CTCF_in_10a_overlaps_gr
CTCF_in_10a_profiles_dt	CTCF_in_10a_profiles_dt
CTCF_in_10a_profiles_gr	CTCF_in_10a_profiles_gr
easyLoad_bed	easyLoad_bed
easyLoad_broadPeak	easyLoad_broadPeak
easyLoad_FUN	easyLoad_FUN
easyLoad_IDRmerged	easyLoad_IDRmerged
easyLoad_narrowPeak	easyLoad_narrowPeak
easyLoad_seacr	easyLoad_seacr
expandCigar	expandCigar
fetchBam	fetchBam
findMaxPos	findMaxPos
fragLen_calcStranded	fragLen_calcStranded
fragLen_fromMacs2Xls	fragLen_fromMacs2Xls
getReadLength	getReadLength
get_mapped_reads	get_mapped_reads
ggellipse	ggellipse
harmonize_seqlengths	harmonize_seqlengths
make_clustering_matrix	make_clustering_matrix
merge_clusters	merge_clusters
prepare_fetch_GRanges	prepare_fetch_GRanges
prepare_fetch_GRanges_names	prepare_fetch_GRanges_names
prepare_fetch_GRanges_width	prepare_fetch_GRanges_width
quantileGRangesWidth	quantileGRangesWidth
reorder_clusters_hclust	reorder_clusters_hclust
reorder_clusters_manual	reorder_clusters_manual
reorder_clusters_stepdown	reorder_clusters_stepdown
reverse_clusters	reverse_clusters
safeBrew	safeBrew
seqsetvis	seqsetvis-package
set_list2memb	set_list2memb
shift_anchor	shift_anchor
split_cluster	split_cluster
ssvAnnotateSubjectGRanges	ssvAnnotateSubjectGRanges
ssvAnnotateSubjectGRanges,GRanges-method	ssvAnnotateSubjectGRanges
ssvAnnotateSubjectGRanges,GRangesList-method	ssvAnnotateSubjectGRanges
ssvAnnotateSubjectGRanges,list-method	ssvAnnotateSubjectGRanges
ssvConsensusIntervalSets	ssvConsensusIntervalSets
ssvFactorizeMembTable	ssvFactorizeMembTable
ssvFeatureBars	ssvFeatureBars
ssvFeatureBinaryHeatmap	ssvFeatureBinaryHeatmap
ssvFeatureEuler	ssvFeatureEuler
ssvFeaturePie	ssvFeaturePie
ssvFeatureUpset	ssvFeatureUpset
ssvFeatureVenn	ssvFeatureVenn
ssvFetchBam	ssvFetchBam
ssvFetchBam.single	ssvFetchBam.single
ssvFetchBamPE	ssvFetchBamPE
ssvFetchBamPE.RNA	ssvFetchBamPE.RNA
ssvFetchBamPE.single	ssvFetchBamPE.single
ssvFetchBigwig	ssvFetchBigwig
ssvFetchBigwig.single	ssvFetchBigwig.single
ssvFetchGRanges	ssvFetchGRanges
ssvFetchSignal	ssvFetchSignal
ssvMakeMembTable	ssvMakeMembTable-methods
ssvMakeMembTable,data.frame-method	ssvMakeMembTable-methods
ssvMakeMembTable,DataFrame-method	ssvMakeMembTable-methods
ssvMakeMembTable,GRanges-method	ssvMakeMembTable-methods
ssvMakeMembTable,GRangesList-method	ssvMakeMembTable-methods
ssvMakeMembTable,list-method	ssvMakeMembTable-methods
ssvMakeMembTable,matrix-method	ssvMakeMembTable-methods
ssvOverlapIntervalSets	ssvOverlapIntervalSets
ssvSignalBandedQuantiles	ssvSignalBandedQuantiles
ssvSignalClustering	ssvSignalClustering
ssvSignalHeatmap	ssvSignalHeatmap
ssvSignalHeatmap.ClusterBars	ssvSignalHeatmap.ClusterBars
ssvSignalLineplot	ssvSignalLineplot
ssvSignalLineplotAgg	ssvSignalLineplotAgg
ssvSignalScatterplot	ssvSignalScatterplot
ssv_mclapply	ssv_mclapply
test_peaks	test_peaks
viewGRangesWinSample_dt	viewGRangesWinSample_dt
viewGRangesWinSummary_dt	viewGRangesWinSummary_dt
within_clust_sort	within_clust_sort
