# An interactive tool for visualizing NGS signals and sequence motif densities along genomic features using average plots and heatmaps

## Documentation for package ‘seqplots’ version 1.22.2

- DESCRIPTION file.
- User guides, package vignettes and other documentation.
- Package NEWS.

## Help Pages

seqplots-package | SeqPlots - An interactive tool for visualizing NGS signals and sequence motif densities along genomic features using average plots and heatmaps.
add_local_file | Add files to local SeqPlots installation
getPlotSetArray | Process genomic signal
getREF | Get reference genome
import.narrowPeak | Import function for narrowPeak format
MotifSetup | MotifSetup Reference Class
MotifSetup-class | MotifSetup Reference Class
plot | Generic plot function for SeqPlots package calsses
plot-method | Generic plot function for SeqPlots package calsses
plotAverage | Create the average plot
plotAverage-method | Create the average plot
plotHeatmap | Plot heatmap with optional clustering
plotHeatmap-method | Plot heatmap with optional clustering
PlotSetArray | PlotSetArray Reference Class
PlotSetArray-class | PlotSetArray Reference Class
PlotSetList | PlotSetList Reference Class
PlotSetList-class | PlotSetList Reference Class
PlotSetPair | PlotSetPair Reference Class
PlotSetPair-class | PlotSetPair Reference Class
run | SeqPlots innitiation
seqplots | SeqPlots - An interactive tool for visualizing NGS signals and sequence motif densities along genomic features using average plots and heatmaps.
seqplots-generic | SeqPlots generic methods
[-method | SeqPlots generic methods
[[-method | SeqPlots generic methods